BtaEX6045979 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012827 | TTLL11
Description
TTLL11 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A7E2Z5]
Coordinates
chr11:92852151-92903570:-
Coord C1 exon
chr11:92903506-92903570
Coord A exon
chr11:92866903-92867478
Coord C2 exon
chr11:92852151-92852246
Length
576 bp
Sequences
Splice sites
3' ss Seq
CATCCTTTTTCTCCCTCCAGGTT
3' ss Score
13.21
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AGGAGTACAACTTCTACCCTCGCTCATGGATTCTGCCTGATGAGTTCCAGCTCTTTGTGGCTCAG
Seq A exon
GTTCGAATGGTGAAAGATGGGGACCCCTCCTGGAAGCCCACTTTTATTGTGAAACCTGACAGTGGTTGTCAGGGTGACGGAATCTACCTCATCAAAGACCCCAGTGACATCCGCCTGTCAGGGACGCTCCAGAGCAGGCCGGCGGTGGTCCAGGAGTACATCTGCAAGCCCCTCCTCATCGACAAACTCAAGTTCGACATCCGTCTGTACGTCCTGCTAAAGTCTCTAGAGCCCTTAGAGATCTACATAGCCAAAGACGGACTCTCTCGGTTTTGTACGGAGCCGTACCAGGAGCCCAACCCCAAAAACCTGCACCACATCTTCATGCATTTGACCAACTACTCCCTGAACGTCCACAGTGGGAACTTCGTCCATTCGGACAGTACTAGCACGGGCAGCAAAAGGACTTTTTCTAGCATTCTCTATAGGTTGTCCTCCAAGGGTGTTGACATCAAAAAGATCTGGTCCGATATCATCTCCTTGGTGATCAAGACCGTCATTGCCCTGACTCCAGAACTCAAAGTGTTCTACCAGTCAGATATACCCGCGGGGAGGCCGGGCCCCACCTGCTTCCAG
Seq C2 exon
ATTTTAGGCTTTGACATTCTTCTCATGAAAAATCTGAAGCCTATACTACTTGAAGTAAATGCAAATCCCAGCATGAGAATCGAACACGAGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012827-'1-5,'1-3,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NA
A:
PF0313310=TTL=PU(75.9=99.5)
C2:
PF0313310=TTL=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]