RnoEX0002982 @ rn6
Exon Skipping
Gene
ENSRNOG00000019339 | AABR07051518.1
Description
tubulin tyrosine ligase like11 [Source:NCBI gene;Acc:689746]
Coordinates
chr3:15226686-15278645:-
Coord C1 exon
chr3:15278508-15278645
Coord A exon
chr3:15239133-15239708
Coord C2 exon
chr3:15226686-15226781
Length
576 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTCCCTCCCTTCCAGGTC
3' ss Score
13.74
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CCAGGCATGACGGAGATGGTGCGTAAAATCACCTTGAGCAGAGCTCTGAGGATCATGCAGAACCTGTTTCCCGAGGAGTACAACTTCTACCCTCGCTCGTGGATCCTGCCTGAGGAGTTCCAGCTCTTTGTTGCTCAG
Seq A exon
GTCCAAACGGTGAAAGACAATGACCCCACCTGGAGGCCCACTTTTATTGTGAAACCGGACAGTGGTTGTCAGGGCGACGGAATCTACCTCATTAAAGATCCCTGTGACTGCCGCCTGACTGGGACCCTGCATAACAGGCCGGCAGTAGTCCAGGAGTACATCCGCAAGCCTCTCCTTATCGACAAACTCAAGTTCGACATCCGTCTGTATGTCCTGTTGAAGTCCTTGGACCCCTTAGAGATCTATATAGCCAAAGATGGACTCTCTAGGTTTTGTACAGAGCCATATCAAGAACCCAACCCCCAGAACCTGCACCATGTCTTCATGCACTTGACCAACTACTCCCTGAACATCCACAGCGGCAAGTTCGTCCACTCAGACAGCGCCAGCACAGGCAGCAAGAGGACTTTCTCTAGCATTCTCTGTAGACTGTCTTCCAAAGGTGTGGACATCAAGAAGGTCTGGTCTGATATCATCTCCTTAGTTATTAAGACTGTCATCGCCCTGACCCCAGAGCTCAAAGTTTTCTACCAGTCAGACATCCCAACAGGGAGGCCGGGGCCCACCTGCTTCCAG
Seq C2 exon
ATTCTAGGCTTTGACATTCTTCTGATGAAAAACCTGAAGCCCATGCTACTTGAAGTGAATGCAAACCCCAGCATGAGGATTGAGCATGAGTACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019339-'1-6,'1-2,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(14.6=97.7)
A:
PF0313310=TTL=FE(64.7=100)
C2:
PF0313310=TTL=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCATGACGGAGATGGTG
R:
TCGTACTCATGCTCAATCCTCA
Band lengths:
232-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]