GgaEX0001589 @ galGal3
Exon Skipping
Gene
ENSGALG00000001389 | TTLL11
Description
NA
Coordinates
chr17:9353167-9359384:-
Coord C1 exon
chr17:9359251-9359384
Coord A exon
chr17:9353824-9354399
Coord C2 exon
chr17:9353167-9353262
Length
576 bp
Sequences
Splice sites
3' ss Seq
TTTAATTATTTTCCTTCTAGGTT
3' ss Score
10.65
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCATGACAGAGATGGTTCGTAAGGTCACGCTGAGCCGGGCAGTGAGAACGATGCAGGATCTATTTCCTGTGGAATATAACTTCTATCCTCGCTCCTGGATTCTGCCCGAGGAGTTTCCCCTCTTTGTGACTGAG
Seq A exon
GTTCGTATGATGAAAGAGAGTGATCCATCCTGGAAGCCCACTTTTATTGTCAAACCTGATGGCGGGTGCCAGGGGGATGGAATCTACCTCATTAAAGACCCCAATGATGTCAGGCTGGCTGGGAGCCTGCAGAGCCGCCCAGCGGTGGTCCAGGAGTACATCTGCAAACCACTGCTTGTTGACAAGCTGAAATTTGATATTCGTCTTTATGTCCTACTGAAGTCCTTAGAACCTTTAGAGATTTATATAGCCAAAGATGGACTTTCTAGATTTTGTACAGAGCCCTATCAAGAACCCACTCTAAAAAATTTGCACCAGGTTTTTATGCACTTAACTAACTACTCACTAAATATCCATAGTGGGAATTTCATCCATTCTGATAATGCAAACACTGGCAGCAAGAGGACTTTCTCAAGCATTCTGTGCAGACTGTCTTCCAGAGGAGCTGATGTAAAAAAGGTTTGGTCAGATATAATTTCACTGGTGATTAAAACAATTATTGCACTGACACCAGAACTGAAAGTTTACTATCAGTCTGACATCCCAGCAGGAAAGCCTGGGCCAACTTGCTTCCAG
Seq C2 exon
ATTTTAGGGTTTGACATTCTCCTGATGAAAAACTTGAAGCCCATGTTGCTGGAAGTAAATGCAAACCCCAGCATGAGAATAGAGCACGAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389_MULTIEX1-2/4=1-3
Average complexity
C2
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NA
A:
PF0313310=TTL=PU(54.2=98.8)
C2:
PF0313310=TTL=FE(20.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGACAGAGATGGTTCGTA
R:
CTCTTGCTCGTGCTCTATTCTCA
Band lengths:
230-806
Functional annotations
There are 0 annotated functions for this event