MmuEX6100871 @ mm10
Exon Skipping
Gene
ENSMUSG00000026885 | Ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:MGI Symbol;Acc:MGI:1921660]
Coordinates
chr2:35890272-35940807:-
Coord C1 exon
chr2:35940674-35940807
Coord A exon
chr2:35902570-35903145
Coord C2 exon
chr2:35890272-35890367
Length
576 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCCCTCCCTTCCAGGTC
3' ss Score
13.92
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GCATGACGGAGATGGTGCGTAAGGTCACCTTGAGCCGAGCACTGAGGATCATGCAGAACCTGTTTCCAGAGGAGTACAACTTCTACCCTCGCTCCTGGATCCTGCCAGAAGAGTTCCAGCTCTTTGTGTCTCAG
Seq A exon
GTCCAAACGGTGAAAGAAGGTGACCCCTCCTGGAAGCCCACTTTTATTGTGAAACCGGATAGTGGTTGTCAGGGTGATGGAATCTACCTCATTAAGGATCCCTGTGATGGTCGCCTGACTGGGACCCTCCATAACAGGCCGGCAGTGGTCCAGGAGTACATCCGCAAGCCCCTCCTCATCGACAAACTCAAGTTCGACATCCGTCTGTATGTCTTGCTGAAGTCCTTGGATCCCTTAGAGATTTATATTGCCAAAGATGGACTCTCTAGGTTTTGTACAGAGCCATATCAAGAACCTAACCCCCAGAATCTGCACCATGTCTTTATGCACCTGACCAACTACTCCCTGAATATCCACAGCGGCAAGTTTGTCCACTCTGACAGCGCCAGCACGGGCAGCAAGAGGACTTTCTCTAGCATTCTTTGTAGACTGTCTTCCAAAGGTGTGGACATCAAGAAGGTCTGGTCTGATATCATCTCCTTAGTTATTAAGACTGTCATCGCCCTGACCCCAGAGCTCAAAGTTTTCTACCAGTCAGACATCCCAACAGGGAGGCCGGGGCCCACCTGCTTCCAG
Seq C2 exon
ATTCTAGGCTTTGACATTCTTCTGATGAAAAACTTGAAGCCTATGCTACTTGAAGTGAATGCAAACCCCAGCATGCGAATTGAGCATGAATACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026885-'7-10,'7-8,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(20.5=97.7)
A:
PF0313310=TTL=FE(62.2=100)
C2:
PF0313310=TTL=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGACGGAGATGGTGC
R:
TTCGTATTCATGCTCAATTCGCA
Band lengths:
230-806
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types