HsaEX1046449 @ hg38
Exon Skipping
Gene
ENSG00000175764 | TTLL11
Description
tubulin tyrosine ligase like 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr9:121974884-122039368:-
Coord C1 exon
chr9:122039272-122039368
Coord A exon
chr9:121989195-121989411
Coord C2 exon
chr9:121974884-121974979
Length
217 bp
Sequences
Splice sites
3' ss Seq
TATTCACTGAACATCCACAGCGG
3' ss Score
3.66
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
TTCCCATTTGGCCGGCGCTTGCCTTGTGACATCTACTGGCATGGAGTTTCATTTCACGACAATGACATATTCTCCGGTCAAGTGAACAAGTTTCCAG
Seq A exon
CGGCAACTTCATCCACTCGGACAGTGCTAGCACTGGCAGCAAAAGGACTTTTTCCAGCATCCTTTGTAGACTGTCTTCCAAAGGCGTTGACATCAAGAAGGTCTGGTCTGACATCATCTCCGTGGTGATTAAGACGGTCATCGCGCTGACTCCAGAGCTCAAAGTCTTCTACCAGTCAGACATCCCCACGGGGAGGCCGGGCCCCACGTGCTTCCAG
Seq C2 exon
ATTTTAGGCTTTGACATTCTTCTAATGAAAAATCTGAAGCCTATACTACTTGAAGTAAATGCAAATCCCAGTATGAGAATCGAACATGAGCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175764_MULTIEX1-3/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.019 C2=0.016
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(4.6=42.4)
A:
PF0313310=TTL=FE(62.2=100)
C2:
PF0313310=TTL=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGGCCGGCGCTTG
R:
TCGTGCTCATGTTCGATTCTCA
Band lengths:
189-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains