GgaINT0126317 @ galGal4
Intron Retention
Gene
ENSGALG00000001389 | TTLL11
Description
tubulin tyrosine ligase-like family member 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr17:8646702-8647934:-
Coord C1 exon
chr17:8647359-8647934
Coord A exon
chr17:8646798-8647358
Coord C2 exon
chr17:8646702-8646797
Length
561 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ACACTGTTTGTTATGCACAGATT
3' ss Score
6.84
Exon sequences
Seq C1 exon
GTTCGTATGATGAAAGAGAGTGATCCATCCTGGAAGCCCACTTTTATTGTCAAACCTGATGGCGGGTGCCAGGGGGATGGAATCTACCTCATTAAAGACCCCAATGATGTCAGGCTGGCTGGGAGCCTGCAGAGCCGCCCAGCGGTGGTCCAGGAGTACATCTGCAAACCACTGCTTGTTGACAAGCTGAAATTTGATATTCGTCTTTATGTCCTACTGAAGTCCTTAGAACCTTTAGAGATTTATATAGCCAAAGATGGACTTTCTAGATTTTGTACAGAGCCCTATCAAGAACCCACTCTAAAAAATTTGCACCAGGTTTTTATGCACTTAACTAACTACTCACTAAATATCCATAGTGGGAATTTCATCCATTCTGATAATGCAAACACTGGCAGCAAGAGGACTTTCTCAAGCATTCTGTGCAGACTGTCTTCCAGAGGAGCTGATGTAAAAAAGGTTTGGTCAGATATAATTTCACTGGTGATTAAAACAATTATTGCACTGACACCAGAACTGAAAGTTTACTATCAGTCTGACATCCCAGCAGGAAAGCCTGGGCCAACTTGCTTCCAG
Seq A exon
GTAGGTAGGAATTTCTGTCAAGAGTGCAGTTATTTCTATGCATGGATTCGCTTTCTGGATGTGCCCTTTGCTTTGCTGCTTATCACTTGCTAGATGTGGTGGAAGGAGGAATGGCAGATTCAGCCTGAGCAATGCATTGTATGAGTTCACAGCTTAGGTTCTCCTTACCCAAGTTTTACCTCAGAAATGTCAATGTCAGCTGACCTATGTTACCATAGAGGATATCCATTATTAGCAGCAATATTTATTCCAGTTCCCAGCTTCTGGATGATGCAGCCACGAAGCTTTGCAGTTGTCTAATGAGACCCAGTTGTGATAAATGCTGAAATTCTCTGTTGGTGGATGCACTATTTAGAGCTGATTGTAGTATGAAAGTAGATATTGGGATCAAAGTCAAATGGCTGCAGTAATTATTCAGCAATATTTTTTTATTTCTCAGTTATGTCTCTTCTGTCCCTCACATGTTTCTTCCACCCGAACGTTGACCTTTGAATGACCGCTGCATTCTCTAGAAGAGCACCTTAAATAGAAGGAAAGTAACACACTGTTTGTTATGCACAG
Seq C2 exon
ATTTTAGGGTTTGACATTCTCCTGATGAAAAACTTGAAGCCCATGTTGCTGGAAGTAAATGCAAACCCCAGCATGAGAATAGAGCACGAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389:ENSGALT00000002114:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(59.7=100)
A:
NA
C2:
PF0313310=TTL=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCCCTATCAAGAACCCA
R:
TCCAGCAACATGGGCTTCAAG
Band lengths:
353-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]