DreINT0169406 @ danRer10
Intron Retention
Gene
ENSDARG00000060374 | ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:ZFIN;Acc:ZDB-GENE-061013-747]
Coordinates
chr5:33036201-33038599:+
Coord C1 exon
chr5:33036201-33036776
Coord A exon
chr5:33036777-33038503
Coord C2 exon
chr5:33038504-33038599
Length
1727 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
ACGATGTGTCCCAATTTTAGATC
3' ss Score
9.75
Exon sequences
Seq C1 exon
ATTCGTCTCCTGAAAGATAACGATTCCATTCTCAAACCCACCTTCATCGTCAAACCGGACAGTGGATCCCAAGGGGATGGCATCTACCTCATCCGCGACCCTGCTGACCTTCGGGTGATCTCAGGTTCTCAGATCAAGCAATCGGTCGTTCAAGAATACATCCAGAAGCCCCTGCTCATCGATAAACTCAAGTTTGACATCCGCCTGTACGTTCTGGTCCGCTCACTGGATCCTCTAGAAATCTATATCGCTAAAGAAGGCTTGTCCAGGTTCTGCACCGAACCCTACCAGGAGCCCAGCCAGAAGAACCTCAGTCATGTTTTTATGCACCTTACCAACTACTCGCTGAATGTGCACAGCGGTAACTTTGTCCACTCTGACAGCTGCAGCACGGGCAGTAAACGCACCTTCTCTAGCGTCCTCTACCGCCTGGCGTCTAAAGGAGTGGACATCAAGAAGGTCTGGTCAGACATCATTGCTCTGGTTATCAAGACTGTAATTGCACTTGTGCCTGAACTGAAGGTCTATTACCAAGCTGACATACCACCTGGAAAACCAGGACCCACATGTTTTCAG
Seq A exon
GTATATTTGCTTATTTGTTTTGGAAGCACTTTAGTTTGGGGCCCAATTTTCACTATTTAAGGCACAATATACAAGATTTGTAAAATAGTACACTGTAAGAAATAAAGGTACAGGAGCTGTCACTGGGTCAGTACCTTTTCAAAAGGTACATATTTGTACCTGAAGGGTCCACATGGTACCTCAAAGGTACTTTATAGGTACATTTGGGCACTAATATGCACCTTTGAGGTACCACTGTGGGCTCTTTGGGTACAAATTTGTATCTTTTGAAAAGGTACTGACCCAGTGACAGCTCCTGTACCTTTATTTCTGAGTGTAGGGATTTCCTGATCAGGTTTTTTTAATCCGAGTGATTTGATTTTAAGTATCTACCGATACCAAAACCCAATCCGATAATTCTATAATACATAGAAATAATAAAGGAGAGCGAAGAAACAGATCCAAGATGTTCCTTATTTTTTATTTAATTTACCTTTTGTGAACATTCAACAACTCTGTTAATACACAGAGCACTTCTGTGAGGTAGCTTGAACAATCATGTAATAAATACATTACATACATTCTTACGTGCTCACTAAGCATAAGAAATCCAGGTTTCTCTACAAAGGCAAATGGCAGGTCACTCATTGTGATCATTTGTGCTATCTTGGCTGTGATGTCCTGTGGGTCGCCTGTCCTTGGGTTGCCTGTGTAAATTGGCTGTATTGTGTCGGGTGTTTGTTTTTGAGATGCCTCATCAGGTTTGTTGTGTTAAATTTAGCTTTTTCTTTTTAAGTTCTGTCATTATCCACTTTATAATACCTCTAGACCGCAAACAAACACGCGCTTTCTGACCAATAGCATCTCTGCAACAAAGTGATGTCATGCCAAAGTCAAGTGTGAAGTCAAGAAAGGGGTCTAACTCTGTGCCACTGCATAACTATAGATGTGTTCAAAAATAATGAGAATATATACATATATATGCAAGTACTTAACGGAAGGTAATGTCTGATTCCAATCAAGTCTGAAAGTGCGTGATCGGGCCCAGTTTCTGATCGTGTGATCAGTGTACAGTACAGTGTACATGTACAGTATTCGGTTTGATAAAACAGCATTAATCATGATCATGTGATCACCACTGGAAGAATTTGAAAGAGATAGAAAGAGGTATAATTAAAGCTCCACTGCGTTTGTCCTGCGTCACACTTTTGGAGAAGTAAAAGTCAAAGTTTAAAGCATAGTTCACTCAAAAATGAAAAAAAAAAAAATCTGCCATCATTTACTAATTCTCCACCAGTTTTAATGTTTTTGTTCTGTTGAAGAATGTTGGAGACTTTCAACCATTGACTTCCATAGTATTTGTTTTTCCTATAATGGATGTCAATAGTTAAAGGTTTCCAACATTTGTCAAAATATCATCTTTTGTGTTTAACGGATCAAAAAAATAAATAAATAAATAAACAGGTTAGGATCAAGTGGAGGAATACTAACTGATGATATAAATGTCACATTTGAGTGAACTATCCCTTTAATAGTTAGTTAATGGTAAGAGTTGGTCCCCAAACTAAAGTGTGATCTTCATTTTTTGGTGCATGCAATGTGTTTTTTGTGGCCTGCATCACTATAATAAGCACTCAAAAGAGCACAATGAGCAAATGCACTGCTTTTTCTTCATGGAGTGACTCATAATTCTGTTTTTCAAAGTTAATGAATAGTTAATTACAGATGACGATGTGTCCCAATTTTAG
Seq C2 exon
ATCCTGGGCTTTGATATCCTGCTGATGAAGAACTTGAAGCCTGTTTTATTAGAAGTCAATGCCAATCCCAGCATGAGGATTGAACACGAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060374:ENSDART00000085684:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(61.4=100)
A:
NA
C2:
PF0313310=TTL=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCAGAAGAACCTCAGTC
R:
TGCTGGGATTGGCATTGACTT
Band lengths:
354-2081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]