DreINT0169758 @ danRer10
Intron Retention
Gene
ENSDARG00000039522 | tubb2
Description
tubulin, beta 2A class IIa [Source:ZFIN;Acc:ZDB-GENE-050522-384]
Coordinates
chr2:1667471-1671101:-
Coord C1 exon
chr2:1670991-1671101
Coord A exon
chr2:1668780-1670990
Coord C2 exon
chr2:1667471-1668779
Length
2211 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
ACACATTGCCTTTTTTTTAGGTC
3' ss Score
9.24
Exon sequences
Seq C1 exon
GAAATAAATTCGTCCCTCGTGCCATCCTGGTGGACCTGGAGCCTGGCACCATGGACTCGGTTCGCTCCGGCCCGTTCGGACAAATCTTCAGACCTGATAATTTTGTGTTTG
Seq A exon
GTATGTTCATGAATCCGACACACAACAACAGATTCAAGGTGTCAAGGAATTAAAAAGAAGTTTATTTACTCACCCTCAGAAAACTGAAGATGTTTCAAGTACATTAAGGTCATGAAATTACATGAAATCAAATATAATCTGTGCACTCAGCCACAGACTTCACTTTAATTAAATACCATAAGCCCCCTTCCCTGAAATGACACCTTTAGGGCGGAGCTTTCAGTCCTTTCATTTAGGGTGGGGCTATCTGTCATTTGGGGAGAGGCTATTGGTCAGGCACGTGCACACATAGGGCTCAACCTGTGCAGTGCACATGCCCTTTTTAGTCTTGGATAGAAAGTGCCCTTCCAAAATGATCAAAAGTGCCCCCGCGACGCGGCACACCCTCGGTCCCGCCCTTCAGTAGGCGCGCGACAACACCGCTCTTCAGAACGCGCGCAACAACAACCAACTCTTCCCCCCCCCCCCCGCTATTCAGAACGCGCGCAACAATTGGTCATTTAGGGTGGGGCTATGTCATTTGGGGAGGGGCTATTGGTAATTTAGGGTGGGGCTATCTGTCATTTGGGGAGGGGCTATTAGTCATTTAGGGTGGGGCTATGTCATTTGGGGAGGGGCTATTAGTCATTTAGGGTGGGGCTATCTGTGATTTGGGGAGGGGCTATTGGTCATTTAGGGTGGGGCTATCTGTCATTTGGGGATGGGGCTATTAGTCATTTAGGGTGGGGCTATCTGTGATTTGGGGAGGGGCTATTGGTCATTTAGGGTGGGGCTATCTGTCATTCGGAGATGGGGCTATTGGTCATTTAGGGTGGGGCTATCTGTCATTCGGGGAGGGGCTATTGGTCATTTAGGGTGGGGCTATCTGTCATTTGGGGAGGGGCTATTTGGTCATTTAGGGTGGGGCTATCTGTCATTTGGGGAGGGGCTATTGGTCGTTTAGGGTGGGGCTATCTGTCATTTGGGGAGGGGCTATTGGTCATTTAGGGTGGGGCTATCTGTCATTCGGGGATGGAGTTATTTGTCATTTAGGAAGGGTTTATTTGTCATTTAAGGAGAGGCTACTGGTCATTTAGGGAGGGGCTATCAGTCATGGTAATTTAGGGAGGGGGCTATCAGTCCTTTAGGGAGGGTCTATCGGTCATTTAGGGAAGGGCTATCAGTAATTTAGGGCTAGAGTATCAAACATTTAGAGAGGGGCTATCAGTCATTGGGGAGGCTATTAGTCCTTTAGGCAGGGGCTATCAGTCATTTAGGGTTTTAGTCAAGTCATTTGTGGAGAGGCTACTGGGGGTAGGGGGGTTGCGGCAATCGGTCATTTAGGGAGGGGCTATGGGTGATTCGTCTATCGGTCATTTGGGGAGGGGCAATTGATCATTAAGTGTGTGGGGGGGGGGGGAGTATCCTTTAGGCAAGGGCTATCAGTCATTTAGGGAGGGATTTTGAGTCATGTCATTTGGACAGAGGCTATCAGACATTTAGGGAGGGGCTATCAGTCATTTAGGGAGGGGTTATTGTGTATTTAGGGAGGGGCAATAAATATTGAAACTGGTTTGAAACTTGAAACCGGTCATCATCCATATCATATCATTCTATCCCATCAGTCAGTAGGAATGTTTCCATCATAAGATGCTAATTAAGTTTATGCGCAAAACTGGAATAATGCATAAAACATTTGTGAACACAGCAGTGTTTCCATCCAATGAGTCCAAGAAAACAAAAATAGTCACTCCATGATAAACTGATGCCGAATATCAAAAGAAAAATGGAAGTTCCTGCATTAGGAGAAGGCCTTTTTTGTATATAATAACTCAAATGCATCTTAGAACAGGCAGACGCGTCATATCAAAGTCGTATTATTTTAGTATAATCTCCGCTCGCATATAACATTTAAACATGTTGGGACCACATCATCCACTCAAACACACCTGATACTTCCCACTATTTTGGCTATCACATGATCTGTTGAGGCAAAATCACAAGACTTGTGTGATCCGCATGCTGGAATTTGTGTTTCCATCATAGCTGAAGCAGATTTTTTAAGATAAGAAGTTCATACTCATTTTTTATATGCTTTCAATGTATGCACATCTTGGCATTTTAATGTGATATTCCAAAATGCGCATAAAAACAGGTGGATGGAAACGCAGCTAGTGCTGTATGTTTTAAACCAAGCTGTCTTTAAACTGGGACACATTGCCTTTTTTTTAG
Seq C2 exon
GTCAGAGCGGAGCTGGAAACAACTGGGCTAAAGGCCACTACACGGAGGGCGCAGAGCTAGTGGACTCAGTCCTGGATGTAGTAAGGAAAGAGTCCGAAAACTGCGACTGTCTGCAGGGCTTCCAGCTCACACACTCTCTCGGCGGAGGCACTGGATCCGGTATGGGAACACTGCTAATCAGCAAAATCCGTGAAGAGTATCCCGACCGCATCATGAACACCTTCAGCGTCATGCCTTCCCCAAAAGTGTCCGACACTGTAGTAGAGCCCTACAACGCTACGCTCTCAGTGCACCAGCTAGTGGAAAACACCGACGAGACCTTCAGCATTGATAACGAAGCGCTCTACGATATTTGCTTTCGCACACTTAAACTCACCACGCCAACTTACGGTGATCTGAACCATCTGGTTTCCGCGACTATGAGTGGAGTGACCACATGTCTGCGCTTCCCAGGTCAACTAAACGCAGATCTCCGCAAGCTAGCAGTCAACATGGTGCCCTTCCCTCGCCTTCACTTCTTCATGCCGGGATTTGCACCGCTAACAAGTCGCGGCAGCCAGCAATACCGTGCGCTATCTGTTCCAGAGCTAACACAACAGATGTTCGATGCTAAAAACATGATGGCCGCCTGTGATCCGCGCCATGGGCGCTACCTGACAGTGGCCGCCATCTTCCGTGGCCGCATGTCTATGAAAGAAGTGGACGAGCAGATGCTCAGCGTCCAGAACAAGAACAGCAGCTATTTTGTAGAGTGGATCCCGAATAACGTCAAGACCGCAGTCTGCGACATCCCTCCGCGTGGCTTGAAAATGTCCGCAACATTCATCGGCAACAGCACAGCCATCCAGGAGCTCTTCCGCAGGATTTCCGAGCAGTTCACCGCTATGTTCAGACGCAAGGCTTTCCTGCACTGGTACACTGGCGAGGGGATGGACGAGATGGAGTTCACCGAGGCGGAAAGCAATATGAATGATCTGGTCTCCGAGTATCAGCAGTACCAAGACGCAACCGCTGATGAAATGGGCGAATACGAGGAAGACGATCTTGAAGATGAGGAAGACGTCCGCCATTAGGAGAGCTCAGTGATCTGCTGATAAGCCATGTAGTTTTCATTGCTTCTAGAATGATCTGAGTTGCCATAGCAATGCAAACAGTGCTGCTTCATCATAGTTCAAAAGGTGCTACTGTGTTAATCGATTTTAAGGAAAGATGCAATCTTGTGGAACAAACAAGGTACAGTTATGATATGTTTTGTAACATATGCTTCACACTGCAGATGCCATGTAAAATAAAAAAGATCTCACTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039522:ENSDART00000024135:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.7=100)
A:
NA
C2:
PF0009120=Tubulin=PD(59.0=36.6),PF0395312=Tubulin_C=WD(100=34.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]