HsaINT0175318 @ hg19
Intron Retention
Gene
ENSG00000137285 | TUBB2B
Description
tubulin, beta 2B class IIb [Source:HGNC Symbol;Acc:30829]
Coordinates
chr6:3224495-3226503:-
Coord C1 exon
chr6:3226393-3226503
Coord A exon
chr6:3226046-3226392
Coord C2 exon
chr6:3224495-3226045
Length
347 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTTCTCTTTCCCTCTGGCAGGCC
3' ss Score
11
Exon sequences
Seq C1 exon
GTAACAAATATGTTCCTCGGGCCATCCTCGTGGATCTGGAGCCAGGCACGATGGATTCGGTTAGGTCTGGACCATTCGGCCAGATCTTCAGACCAGACAATTTCGTGTTTG
Seq A exon
GTGAGTGCCTGGTGTGGCTGAGAGCATGAGGGATTCATTTTACGCTGGGCAGTGGAGGCTGAAGAGGTGTGATTGCCAGAGGGAAAGCATGAAGAACATCCGCGGTGTGCCAACTTAGCTTTAATATAGTGTAAAATTGTTTGCCTTTCAGCTGCTAAGAGCTTGGTGTCCTGGCCTTCCTTATTTATAATTATATTCATGAACAAATATTTTAACGTTTGGCCATTTTGGTGATAATCTGAAATAGTCTTATCTGAGCATTGACTCACTGATCTATATTGAGGGGTTTGAGGTAAGGTATTTAGTACAATCACCGGTGACTTAAGATTTCTCTTTCCCTCTGGCAG
Seq C2 exon
GCCAGAGTGGAGCCGGGAATAACTGGGCCAAGGGCCACTACACAGAGGGAGCCGAGCTGGTCGACTCGGTCCTGGATGTGGTGAGGAAGGAGTCAGAGAGCTGTGACTGTCTCCAGGGCTTCCAGCTGACCCACTCTCTGGGGGGCGGCACGGGGTCCGGGATGGGCACCCTGCTCATCAGCAAGATCCGGGAAGAGTACCCAGACCGCATCATGAACACCTTCAGCGTCATGCCCTCACCCAAGGTGTCAGACACGGTGGTGGAGCCCTACAACGCCACCCTCTCGGTCCACCAGCTGGTGGAAAACACAGATGAAACCTACTGCATTGACAACGAGGCCCTGTATGACATCTGCTTCCGCACCCTGAAGCTGACCACCCCCACCTACGGGGACCTCAACCACCTGGTGTCGGCCACCATGAGCGGGGTCACCACCTGCCTGCGCTTCCCGGGCCAGCTGAACGCAGACCTGCGCAAGCTGGCGGTGAACATGGTGCCCTTCCCTCGCCTGCACTTCTTCATGCCCGGCTTCGCGCCCCTGACCAGCCGGGGCAGCCAGCAGTACCGGGCGCTCACGGTGCCCGAGCTCACCCAGCAGATGTTCGACTCCAAGAACATGATGGCCGCCTGCGACCCGCGCCACGGCCGCTACCTGACGGTGGCTGCCATCTTCCGGGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTCAACGTGCAGAACAAGAACAGCAGCTACTTCGTGGAGTGGATCCCCAACAACGTGAAGACGGCCGTGTGCGACATCCCGCCCCGCGGCCTGAAGATGTCGGCCACCTTCATCGGCAACAGCACGGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACGGCCATGTTCCGGCGCAAGGCCTTCCTGCACTGGTACACGGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGACCTGGTGTCCGAGTACCAGCAGTACCAGGACGCCACGGCCGACGAACAAGGGGAGTTCGAGGAGGAGGAGGGCGAGGACGAGGCGTAGATGCCCCCGCGAGACGGGTTAGGGAAAGCGGAGGAGGAAAGCGAGGGGGTGGGGGGCTTCCCGGGACGATAACCTGGCAGTGGAAGGAAAGAAGCATGGTCTACTTTAGGTGTGCGCTGGGTCTCTGGTGCTCTTCACTGTTGCCTGTCACTTTTTTTTTCCTTTTTTGTAATATTGATGACATCAATGTAACATTTGAGATATTTCTGAATTACTGTTGTAATGGCTAAAATCACATAAACGTTTGTGTCGGAATGGTGTCCTCTCTTTCTCTTCCTTTTTCTCTTTATTAACGATTTAAATGTAACTTTCTGAACACATTGCATTGAATTCTTCCTTTAACAAAAAGCAAAGGCGTAGGTAAAAGCTCAAATGAATTTATTCTTTCGGTATGGTAAAATTGAACCAATCACAGTTAAGATGAGAGATCAACCTGAGTTTTAAAATACCTTTAATAAATATTAGTTGAAAAAATGTCTACTTGAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137285-TUBB2B:NM_178012:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.7=100)
A:
NA
C2:
PF0009120=Tubulin=PD(59.0=37.0),PF0395312=Tubulin_C=WD(100=34.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGCCAGATCTTCAGACCA
R:
TCTGTGTTTTCCACCAGCTGG
Band lengths:
350-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)