GgaINT0096288 @ galGal3
Intron Retention
Gene
ENSGALG00000013855 | E1C520_CHICK
Description
NA
Coordinates
chr2:67484456-67485173:+
Coord C1 exon
chr2:67484456-67484566
Coord A exon
chr2:67484567-67484747
Coord C2 exon
chr2:67484748-67485173
Length
181 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TGCTTCTGGTCTGCCCGCAGGTC
3' ss Score
11.99
Exon sequences
Seq C1 exon
GTAACAAGTACGTCCCCCGTGCCATCCTGGTTGACCTGGAGCCCGGCACGATGGACTCGGTGCGCTCCGGCCCCTTTGGACAGATCTTCCGACCCGACAACTTTGTCTTTG
Seq A exon
GTGAGTGAGCGTGCCGTGGAGGCGTCCCCCAGCGTGGGCGAGGCGTGTGCTGGTGAGCCCCATGGGGGGGCTGGATCCCAGCAGTGCCCTAGGGATGGGAACGGGGGGCGTGAGGGCGCAGGTGGACCTCGGTTCCTCGCGGGGGCACTAAGGTGGCGCGTTGCTTCTGGTCTGCCCGCAG
Seq C2 exon
GTCAGAGCGGGGCCGGCAACAACTGGGCCAAGGGGCACTACACGGAGGGCGCTGAGCTGGTGGACTCTGTGCTGGATGTGGTGAGGAAGGAGTCGGAAAGCTGCGACTGCCTGCAGGGCTTCCAGTTGACCCACTCGCTGGGCGGCGGCACCGGCTCGGGGATGGGCACCCTCCTCATCAGCAAGATCCGCGAGGAGTACCCCGACCGCATCATGAACACGTTCAGCGTCATGCCCTCCCCCAAGGTGTCGGACACGGTGGTGGAGCCCTACAATGCCACCCTTTCTGTGCACCAGCTGGTGGAGAACACGGACGAGACCTACTGCATCGACAACGAGGCCCTGTACGACATCTGCTTCCGCACCCTGAAGCTCACCACTCCCACGTACGGGGACCCTCACCACCTGGTGTCGGCCACCATGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013855:ENSGALT00000037216:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.7=100)
A:
NA
C2:
PF0009120=Tubulin=PD(59.0=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTTCCGACCCGACAACT
R:
TGAACGTGTTCATGATGCGGT
Band lengths:
255-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]