DreINT0171895 @ danRer10
Intron Retention
Gene
ENSDARG00000061541 | unc5db
Description
unc-5 homolog Db (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-060531-162]
Coordinates
chr5:26754623-26759156:+
Coord C1 exon
chr5:26754623-26754979
Coord A exon
chr5:26754980-26759071
Coord C2 exon
chr5:26759072-26759156
Length
4092 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TAATGGTGTTGGTTTTCTAGGAG
3' ss Score
7.22
Exon sequences
Seq C1 exon
GCAATCCACTTCTACTGAATTCCTCCATGCAGCCTGATATAACCGTCGGCCAGACCTACAGCAGCCCAATCTGCTTTCAGGACTCCATCGACAAAGAGCTCTTTGACCCCTTGCCCGACAAGGTCAAAGTTCAAAGCTCCTTTATGGTTTCACTAGGTGTGGCAGACCGGGCCGAGTACCATGTAAAAGCTCATCCACAAACCCTCCCTGCAAACCTTCACCCAAACTACAGCATGGTAGAAGGAAAGAAGACGGCCACAATGGCTCCCAATGGACTTCACACCCCCGGGAAGATTCAGCTGAAGACAAGCGCTGTGTTTGGACACCTGGGTGGCCGATTAGTCATTCCAAATGCAG
Seq A exon
GTGAGAGAGAGTATGGGTTTGTAAAAGATACAGCTTACATTATTTTTTATGAAATGACAATCATGATGGGAAGTAACCTTAAGGCTTCAATATACTTGGAGTTTTTTATTCATTCATCTTTGTTTTCTGCTAAAGGGCAAAAAGTAGTTTGGTGTACCAGTGATTGTCCTGATGCCATCTGCTCAAAAAGTGCTTGGATGAATACAAATACATGAAATATGATGATAAAATAAATGTACAACTGAAGTTACAATGATGAGAAAATGGAAGTTTAGAATACATGTAAATTCAGTATGCATGTGACAAGATCTCGTGCTATGAGATTTCGCAAGACTAAATTGTCATGAAATTTCTCGTTGAGGTGAAAAGTTGTCTCATGAGTTGTGAGATATGATGAAGCATGAGGGTGAATTAAGCAATAAAGATCGGAGGCAGAATTTGATTAGAACCGCACATCAAGTGCTTTGCACACATCTGACAGTCTGGCCTTGGAGTTGTGTGTCACTCATTTAGGCCGGGTGAGTGTGACATAACCTATTTTTGCTTCACCTGAGTTCAAGAGTTGCAACGTCCGAAAGCAGAGACTGCAACAACTGCAGCCACATGCATTAACCATTGCTCATAAAGTTCGATGGGATAGCTCTTTAGATAGACTGTGAAAAATAAATATGTAAAATTTACAGCAAATAAGGCAGCTGTGCTTGCCAGTATTTTACCGTTAAAAATACAGTCCAAGCCATAAAGTAATTTCTCATTTTTACAGTAAACTACCGTATTTCCTTAATTTATAGATGTAATATGTCTGTACTTTTAGTTACCAACATCTACACATCTCTTTTTACACAGATAGACACGATAACACAGCCATATGCAGGTGGTGATGAGGAAGTTACATAATGAGCCAATGATCATCACAAACAACTTTACCCACAAGCAGAAAAGTGAATCAGTGTATAGAAGGTGCTCAGTGTCATTCACACAGCCACTAAACACCAGTATGGTAAAACGCATAAAATTAAAGTCATGAAATAAACATTGTTTATCAACATTAGAGGTAACATAATTCTCTAATGTACATAACTGATGGGGAAACAACTAAAAAGGTTCATATTAATGTCAACAAAAAGCATAAAAAGTGATGTGCCATGCGGTAAATTCTGGGAATGTCAGCTTACGGTTATTTGCCATATATACTAAGGAAACGTACTGTTAACCAGGTTACAGATTTTTACTATATTATTTTTACTGTTTTTTTACCATTGAAATCACAGCCATTTTTTACAGTGTATGCTTCAAGCCATAATCGTCATAAACACTAAATAAATTAAGACGTGTAGTATTCTTATTTCAGTCACATTATTGAAGTAAGGTACAGACATGTAAACACCATGATCAAACTATTACTGTTGTTTAGGACTTTTAGCTGCATTTTGTGCCAAGATAAGCTATACACACTGTTTGACACCTCTGCAACCATCCAGTCAGTAAAGGACCACAAACACACATCTCCTCCGAGTGTGCGCACACACACACACAGTAAACTCCTGAAGACACATACAGCCCTCGTTGTCATTATCATCATCAGCGAACACGTTTATGCTGTCTGGAAAAAAATGGAAGCTGTTACTGAATGAAAGTAAAACCATTGAAAAATTAAAAAGCAAAAATGACATGATTACATGATTACAAGTTGATTTAAATAAAGCACCTAAATTGTTTCGCATTTTGGGATTTTTCTTCAGTTGGATAAAAATCTATTTTCCATTCATTTATTAGCAAAAAAATTAGCAGTGTTTGCATGTCCTTTACTGCATAGATTCCATTAAAATAACATTCATTACAAGTTAATTTTAAAAAAGCACCTAAAAAGTTTTCCAATTTGTGATTTGTTTTTTTCCTTTGAATAAAATATTTTAAATCCATGTATTTCATCATTAAAGATTTCTTAAACATACTGTAAAAATCTTGTTGTCTCGTCTCGTGAACCCAATCTTGTGTCTCTTCTCGTCTTGTGGAGTAAGCGTCTCGTCACACTCCTAGATTTTAGCGATACATTTTTTGCAATTCACTACTCGCAATCAGTAGCAATTTCTGGAATTTCTTTAAATAAAATATATTTATGATTTTAAACATGTAAAGTGTCAGTGTTTAATAAAAATTACACTTCAGTTAATACAGTAAATGTAATGCAATACATTTTATGTTTTTGCTCCCAAAATGGGTGTAAAAAATTAAATAAGATCAAAGTACCTCAGAGCCACACTTCCCTACACTAATAGGAGTTGAAATGTGTTTACCAGAAAGTTCACTTTGTCAAGCTGTTTTTATAATGAATTTTGTTTGAACATGATTTTATTCAAAATGACATCACAAAAATGCATTCTTTCACTGTACATCAAGCCTTTTAAAGGGATTTACAGGCCAAAATTAATTAGTCATCATTTACTCATGCTTTACTTATAAAGCTGTTAGAGTTTAATTTTTCTGTTCAACACAAAAGATGTCTTGAGGAATATTGAAAACTGGTAGCCATTGATTTTTTTGATTTGTATTTTTCCTGCTTTTTTTGAAAATGGCCATGGGCTTACGACATTTTTCAAACTTTTTTTGAAATCTTCTTTTGTGTTGGGATGAATGAAGCTCTAAAACAAGGGTGTTATGGAATTATGGCAGCCCTCAAAAGGCCATTTATAACCGTAACTACTTCTTAACATTCTGTTACAATTACAGCATATTACAGTAACACATAAATACATGCATTCACATAAATATAAAGTAAATATTACTTCTTTGGGTTATTTCAACATGAATATAGGTTAACATTTATCAGTTTAAAAAACCCACATTACTCCAAAAGTCAATAACAAAGACAAATATCATCCGAAGCCAATTACCTTTCTTCAAAAAGTTGTCAGATTTGAGAAAAGCAAAACTATGGAACTCAGTTTTAAACATACATTATGGAAAAGTTTGTTTAGTCAATATATGAGATACTGTAAAGCAAGATGGACTTTTATTATATTGCTGGATTCACAATCATTACACCGTAACATCATTTGCAGTGACTTTGTATGCAATCTACTCGCATGAATACTAATACACATTTGCTGTGAATCATATGCTTTCACGGGCCACATAAAATGACATGGTATTTGGCCCATGGGCATTGAGTTTGATACAAGCTCTAACAGGTTTTTAACAAGTGGAGAGTGAGTAAATGGTGAGTAAAAGCATAAACCTTTCCTTTAGACTAGAGGCCAGTTATAGTCAATCATATTCTTAGCAATTTGTTTAAATTGAGTACACCTAATAATGGATTCCCCATCACTTACTTTCAAACCCACAAACAGTGCTTTTGGCGACTGAACAGTATGTGAAAGATTTGTTTTCTCTAATCATCTGTTTGCATCTAATAAGCGCTCTAAAAACAAATGTTCTCTTTTGGCTGATGCATGTAAAGGTCAACAATGCACTGAACCCACTCTCTGGGGTCCTTGTGTTGAAGAGTCTTTAAGGCCAAAGAAAAACATTTTGTCCCACATCATATTCAGGCCAACTACACAGAATGAGATTTTAATATTTTACAAAAAAAGCACAAGTCCTATTATTTATGAGTGCCATGAGGAAGTATAAGGAGACTACAAAACATAAGTACAGTTATTCCAATTGTAAACCTCATTTCTCTGAATAGAGAATGTTCCTGAATCAACATCTTTGTTAATCTTGGAACAACATTACAATCAACCAATCAGATTTGAGGGATATTTTAACAACTTTCAGACTTGCAACATGGGATACTGGCTTGTATTTTTATTTATTTATTTATTTATTTTCAGATTTTAGTGGTAAAAAAAGGTTGGCTATGGTTGGTCTTAAGAGTAAGGGTTGGACTATTCAATTTATTAACATATTTATTATTTTTTAGACAAGACTGGGATAAATTGGTAAAGAAGAGTATTTGTCTGCTGCCCAAAAATACATATTACTTCGTTATTAAATGCTCGTTTTGGCAATAATTGCATGTATTATAGGAATAAATGTGTTGTGTAGCTGCATATAATTGGTGTGTCAGTAATGGTGTTGGTTTTCTAG
Seq C2 exon
GAGTGAGCTTGCTGGTTCCTCACGGGGCGATTGCTGATGACACCTCTTGGGAAATGTACATGCTCATAAATCAAGGAGAGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061541:ENSDART00000087857:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=17.5)
A:
NA
C2:
PF0079115=ZU5=FE(27.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]