GgaINT0136165 @ galGal3
Intron Retention
Gene
ENSGALG00000001608 | UNC5D
Description
NA
Coordinates
chr22:1904320-1905705:+
Coord C1 exon
chr22:1904320-1904697
Coord A exon
chr22:1904698-1905620
Coord C2 exon
chr22:1905621-1905705
Length
923 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGCCTTTCCTCTGTTGTAGGAG
3' ss Score
11.72
Exon sequences
Seq C1 exon
GTAACTCCCTGCTTTTGAATTCATCCATGCAGCCTGACTTGACAGTGAGCAGAACGTACAGTGGACCAATCTGCCTGCAGGATCCAATGGACAAGGAGCTAATGACAGAGTCTTCGCTGTTCAACCCGCTGTCAGACATCAAAGTCAAAGTTCAGAGTTCGTTCATGGTTTCTCTGGGGGTGACAGAGAGGGCTGAATATCACGGAAAGGCACATTCTGGAACTTTTCCTCATGGGAATGCTAGAGGTTTTGGAACAATACAGGCTAGAAACAAGGCTGCATACATTCAGAACCTGTCTTCTATTTCAACAAGAAATGAACTGAAGACAACTGCCATCTTTGGGCACCTGGGTGGTCGTTTAGTGGTTCCAAATACAG
Seq A exon
GTGAGTAGATCCTTTTTTATTAGTGACACATGATTTTATATGAAACTCACTTTGCTTGATGCAGTGTTTTACCTGTTCATTCTATGAATTAAATACATAAGAAGTAGGAGCTTCCGTAATGCAGATTCTGGGAAGTAGAGCATCTTGCCCACACAGGAGGTGACTGATCAAAACAACGCTTAGGATTAGTAGTAAAGAGGTATTATGCCTATTTGAACTGCTGCAAATTACCTCCTCTCTTGATGCCTTTAGCATCAAAGTTGTATTAATCAAAGCTGTAGCTTACTTGGATCCTGATCCAAATGAAGCAGTCTGCAGAAAGGAAATTGCTATTGGATCAGGATCTCAGATAATGGGGTCAAATTCAAGGCAGAGTCTACACACATCAGCACCTGACTGCATTAACACTGTCAGACTTTATTATGTTATTAAAGTCTGCAGCACGTAACAATTAAGGTGTCTCAGGAGAAATAGGAGAACTCTAGCACGGCTTTCATTATTGTACTCCTGGCTTTCTGGTTTTCTCTTTCTATGAGATGAGCAGTTTGACAGATTTCCATAGTAGAGCACTTCAAGGCTGGGCCATGCACTGAAGCACTGCAACAGGAATGCTCAGTTTGCATTAAGAAGTAGAATTTGTTTTGTGACTTCAGAGTTCTGTGAGACAGAATTCGAGACTTTGCATGCGTTAAATTAGCTGAGAATGTCTAACATCGAATAAAGGATGTTGAGATCATGCTCGTGCAGTGTGTTTGCACTACACCACCATGTTCATATAGTGCTGAGTAGTTTCCTCTCTGTCATGGCTGGATGCCCCCATTTCTGGCTAACAGGTTGTCTTTCGAGCTCTCATGATCTTTATTCAGGGTTTCCTTTAAACTCAGCTTTACATCCAGGTAACTTCTGCCTTTCCTCTGTTGTAG
Seq C2 exon
GAGTCAGTCTGTTGGTGCCACATGGAGCAATTCCTGAAGAGAGTTCATGGGAAATCTATCTTGCCATCAACCCAAGAGAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608:ENSGALT00000002447:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.6=16.5)
A:
NA
C2:
PF0079115=ZU5=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACAGTGGACCAATCTGCC
R:
AATTGCTCCATGTGGCACCAA
Band lengths:
356-1279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]