HsaINT0177900 @ hg19
Intron Retention
Gene
ENSG00000156687 | UNC5D
Description
unc-5 homolog D (C. elegans) [Source:HGNC Symbol;Acc:18634]
Coordinates
chr8:35583670-35588614:+
Coord C1 exon
chr8:35583670-35584047
Coord A exon
chr8:35584048-35588529
Coord C2 exon
chr8:35588530-35588614
Length
4482 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GTTGGCTTTTTCTGTTTTAGGGG
3' ss Score
11.46
Exon sequences
Seq C1 exon
GTAACTCCCTGCTCCTGAATTCTGCCATGCAGCCAGATCTGACAGTGAGCCGGACATACAGCGGACCCATCTGTCTGCAGGACCCTCTGGACAAGGAGCTCATGACAGAGTCCTCACTCTTTAACCCTTTGTCGGACATCAAAGTGAAAGTCCAGAGCTCGTTCATGGTTTCCCTGGGAGTGTCTGAGAGAGCTGAGTACCACGGCAAGAATCATTCCAGGACTTTTCCCCATGGAAACAACCACAGCTTTAGTACAATGCATCCCAGAAATAAAATGCCCTACATCCAAAATCTGTCATCACTCCCCACAAGGACAGAACTGAGGACAACTGGTGTCTTTGGCCATTTAGGGGGGCGCTTAGTAATGCCAAATACAG
Seq A exon
GTGGGTGGTAAGTGTGTGTTTGTGTATTTTCCATCATTTAAATGTTTCATTTTTACACAGTTACTTCCCATCAGATTCATTTTATGATGTTTACTCTCCCCTCATCAGACCTGCAAACACTGCGGCTCCACTAGTCCACTTGATTTACACAGCAAACCAGAACCAATGCTGAGATTAGATTTTGCAGTCTTCATCTCAGCATGGATTGAATGCTCCCTTTGATTCCCTGTTAGAGCTGATAACTATATTTGCCTGAAAGGTTTGGGTAGTCCCCAGGCTTTAAGCCCCTTTGGAGTATATTTCCTAGGCATGATAAGAAAGCACTGAAAAAATTCTCTGGCATGACAGACCAGGGCCCCATGTTTATACCTAAGCATGGTTTATGTACTAGTTTGATAATTTAGATAATTTAGTGAAATGACATCTCATCAGTAACTGACCTAATGAACACTCCATAGCCCTTGCTATAGTGTTACTTTCTGGTGAGCAACGATGAGGGGTTGTTGTAGAGTTGCTCTTTTGAATTTAAACTTCAGTTCCAGGGCTATGTCAGTATAATGAATTCTCACATATTTTGTTCCTCCTTTTAGCTGGAAGAGAGGAGATTTTCATGATGTTTTGACATGATACTTAAAGTATCCAGCCCAGATCACTTTTAAAATGATATCCTTTCTATGGATTAGTTTTCAAAGTTGCTGCCTAAGACCTAAGTGGATGGTAGACAAGGTCAATTTCTGCTCGGATTTCTAAGCAATGAGAATTAGGTAGTGCACTGAAGCAGGTAGTGATCTGTTGGCTGCTAAGAGGGAAGAGTATCTGTTGGATCTGTAAGTGTTTATCAAACAACAGGTCAGCATTGAGTCAGGGACATTATAGTCTAGACAGATGTCTCTCTAGGGTGGAGCTAACCAACCTCTCAAATCGAGCATTTCATTCCATAAATAAAATCTGTAATAGGACTAGTCTGATTCTACCATTCTAGCTAACTGACCCCTCTAGTAGCTTAGAGACTGGAGACTGAAATTCATTTCTAGTTGATGAATGTTGTCTTGTTCTCCCCTAGAGCAATTACTTCCTTAAAATCTTCATTTCAAAACATATTTTACTTCATCAAAATAGCCCTCAATGGCAGCCGTAATTGAATGGTTTTGTTTTTTAAATTTCTAATTCTCTAAATCTTCATTGGTCAATGTTTTAGGACATGGTAAGGATCTTTGTTCAAATGTGTATGCGTGTCAATGTGTGAATGCCTACGCATGATTTAATTCTTCCAGTTGATAATTGGAAGATAATGAGTCAATCAGACATATTTACCAATTAACTTTTCTGTAAGAATTCATAAACTAGACATGTGAGTCCTGAGGAAAGAAAAAGAATACAACCCTTGCCCTAAAGAACACGACGTGTCAGAATTATATAAAATTTGGCAGGGTGTAGTGGCACACACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGGAAATCGCTTGAGTCTAGGAATTCGAGACCAGCGAGGGCAACATAGCAAGTTGCTGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATGCCATAAAAACAAAAATACAGAATCATATAAAGCCATGCATTAAGTTATGCAATTATCTTATCTCTTTCTTGCTCATGCTTGGCACTTAGAAGGCTCTCAGTTATTAGTTGATAAACTGCCCATTACTCCTTCTCTCTCTTTGCATCCTCCTTTCTTAGTGTATGTATGTGTGTGTGTGTGCACATCTGTTTACACATATGTAGAGGGAGAGCCATGACCAACCCGTTCATTGGCTGTGTTTGTCGTTCATCAAAGAAAGCGAGATGAAATCATGATGAACCAGAGATTTACCTTCACCTCTGACTTGAGCAGCACTAACGTTGAAAACTAAAAGTTCTGACAGCATTGTCAGTGATTCCCAAACAGTTTCTCCTTGAAATGGGGCATTTTCAAAGCTCCTGACAAGGAGTGTTGGACAAGATTGAAGCTGTTCACTGGGAATAAGTTTGATGTAAAATAACTGTGGAGAAGTAAAACATATGCTCTGTTATTTGCAGGAAATAAATGCAAAATATGCCCTAGGGAGCTAAAGTATAAAGAAAGCAAGGCACTGAAATTAGATTGCTCTAATGCCATCCATCCTAAATTATTGTATGGTGCCTAGCAATGATTTCTCCAAAAGGTTAGGGTGGTCTCCACACTCTAGAAATTATTTATTATTCCAAATATAAAACAGGAAGCTCAGACTGGTGCTTCTGTGGTCATATCAAATAAAAGGCTGTCAGGGTAGCAGGTGGAGTATGGGGTATTATATTTTTCTTTAATCAGAGGTAACTGGCCAATGACATATTGAAGTGAATTCTACTTTAGAGGATCACAGGCATAAAGCTGTCCCACAGTATCTCTCATTCTTCACTATCTGTAACTTGCCACTCCCCATGTGCCTTTGTGTATGACTATTTCAGACTCCACGTAGTATTTGCATGTTTGGGCAGGAGGAGTGGGGGAAGTATGTTTGAAAGATAACACCATTTCTGATTGAAGAGAGAAAAATCATTTAAAGCTCCAGTGATCCCATAGATTCAGGTTGAATTCAGGAGTATTCTGAATAATGTTTCAATCTAAACACAGATAATTAAGCCAACTTGAAAGGAATAAGGTGTGATCTGCGCAGACAGCTCTTTCTCAATTGTCCTCACACATCTTTCTTCTGTTTTGCTATGAGAGTTGGCCATCAGGCTATGATGATCTACAGAAGCTAACATGTCTCGGACCCTGTCTTTTTTACTAAGAATTTTGAATCCTATTTCGTTTATATCTTCATGATGTGTTTATTGGCTTCCTGCTACACGAGTGGCATTGTGATAAGTGTAATTGATTTAATATTATTATTGTTGCTTGATGATAGTTTCCTGTACTTCTAAGTCTGAAAAATACAGACTGCATGTCTCTGTCATCGTAATGACCTAGACAGCCTGAAAGAGCGGCAGCAGAGAGGAAGTTTTAGGTCAAACTAAGAGAAGACAGAATGTCGAGGGCATGTATTTAGGTTGACTTCCGAGCACACTGGATGTCCTGTGTCTTGCAACTTGTGTTTAGCAGCAGGGAGGTTTATAATGGAGGCCCCTTCATTTGGCAACTACATTTAAGGAAGAATAGACAAGGGAGGGAAGAGTTGGACTGGAGGTCTCTAAGTGTGGCAATTATAGTTCTACTATTGACATTAAGGTTCAGAATATAAATGGACCTCCATAAGGCCAAGCTGTAACCAAGATTTAAACGTGCCTTATTCTTAGTGCTGGTGAAAGATACTGATAACTAGCATATTACTGAATAATGCTTACAAATGTGAATCATAAATGACTTGTTTTGCAATAAGGTTTACGTTTTTTGGTTTTGTTGCTGCTAACAGGCACATAGAAGGAGATCAGGAAAGACTGCCATCTCTAGATTTAAATTATCATCAGCAACCTGAAACTCTTCTGAGCGATTTACATTAGCTCTAATGAAAGGAAAAGAAGTTGAGAGCTGCCTTACTCAAAGAATAGGAGGTTGCCTTGAGATTTTATTTTGTAAGGATCTTACTGTTTCTCTATTTCATTTCTTTTTATAAACAAGAAGCTACATTAAAGAGAATCCCTGCCCTCCTTAGACTCTTCTTTCTTGGCCAAGGTGCAGTATTTTCTTCACAGCGTTTTAGAGGAAGGAGAGGACATTTAAGATGCAGTGAGATGTGGCTTCCTGTGCCTTCCCTTCCTGCATTGTATGATTTTATGGAAGTAAGGCTGCTAGTTTTTCCAATCTGACATTGACATGACTCTAGTTAAGTAACCTTTCGCCTTAACCCTTTCTAGGTTCTGTTTGCTAGAAAGGGTCATGGTTGTGCAATAATCTATAAGGCTCCTAAGTACATCAGATGCTTTCACTTTCTTGACAAAATGCGACACCCCACTGAGTACCACCTTCAACTTGCTTCCAGATGCACTACTGGTAAGACAGCTTCATCCTGGGTTCTAGCACAGTATTAGATCACTCACTCACCCATCATTTCATGTAGGTTTTCAGGAAATAAACAGATAGTGATGAGATATACATTTTTTTAAATTTTGGAGCAGATTAAGTGATGTATGGATAAACTCTTGCATTCTCAGATATGTTTAATACTGCCTGGTCTTAGAACACTCAATCTTTTAAAAGAATTAATGCTGGGATGACTTAAAATAAAAAAAAAAAACTAATTTGAGTACTCAGTTGAATAATATGCCCTTCCTTATGTCACTGTTATAAAACAATGTTTTTCCTGTTATAATCTTGAACCTTAAACTTTCCAAGGATTGAGATTTCATAAATTGCCATGAGAAAGTAGCTTGTTTTCCAGGTATCTGTAAGGTGCTCGAGTGACAAACTTCATGATAATTGGAAAAATCTATGAATAACCTGTTGGCTTTTTCTGTTTTAG
Seq C2 exon
GGGTGAGCTTACTCATACCACACGGTGCCATCCCAGAGGAGAATTCTTGGGAGATTTATATGTCCATCAACCAAGGTGAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156687-UNC5D:NM_080872:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.6=16.5)
A:
NA
C2:
PF0079115=ZU5=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)