DreINT0172695 @ danRer10
Intron Retention
Gene
ENSDARG00000016163 | usp33
Description
ubiquitin specific peptidase 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2323]
Coordinates
chr2:8949893-8950125:+
Coord C1 exon
chr2:8949893-8949963
Coord A exon
chr2:8949964-8950091
Coord C2 exon
chr2:8950092-8950125
Length
128 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TTTTTTTTATTCTTTAACAGGAG
3' ss Score
11
Exon sequences
Seq C1 exon
CTGGTTCTGGGGCCCTGTGGTGACACTGCAGGATTGTCTGGCAGCCTTTTTTGCCAGGGATGAACTAAAAG
Seq A exon
GTCAGATTTGTTTTGAGTCCGATTTAAAAAATAAATAAATAAAAAATAGTAGTAGTAGTTTTCTGCTCATTGACAATAAGCATATTAGTTATACAATTCTTACATGGATTTTTTTTATTCTTTAACAG
Seq C2 exon
GAGACAACATGTACAGCTGTGAAAAATGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016163:ENSDART00000018114:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(4.7=100)
A:
NA
C2:
PF0044324=UCH=FE(2.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTCTGGGGCCCTGT
R:
TGCATTTTTCACAGCTGTACATGT
Band lengths:
101-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]