GgaINT0036566 @ galGal4
Intron Retention
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17901661-17902328:+
Coord C1 exon
chr8:17901661-17901731
Coord A exon
chr8:17901732-17902294
Coord C2 exon
chr8:17902295-17902328
Length
563 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CTCCTCTCTGATGTTTGCAGGTG
3' ss Score
10.01
Exon sequences
Seq C1 exon
CTGGTTTTGGGGTCCAGTTGTAACCTTACAAGATTGTCTTGCTGCCTTTTTCGCCAGAGATGAGCTGAAGG
Seq A exon
GTAAGAGGTTAATTACATGAACATGCTGCTTTTTTTCTCCAGTCGTGACTTAAAAAGTTAGTATATTCTTTGCTTTATGCAAGTAAGCAAAGGCTACCTATTAAACTCTAATACAGTCATGCCTTTCTCTTATGCGGTCAAGGTAAGCTGCTCAGTCATTGGAATATTTAGGCAAGAAACTCCGATGAAAGCTGCTTTAGCAATGTGAAGTGAATCTCAATTGATATGATTAAGTGATATCAACTGAAGGTTCATCAGTATTTCAAAAAACACTATATTGTCATTCTTATAGCCTAAATTTGGTCTGGGCAAATTTTTTTCCTTTTAAATTATATAACATCGTCTCTTCAGACAGCATATGCTGTGTTGCTTTATAGTTAAAGCATAAAATGTAGAACATTTCTATTTAATTGATGTGTCAACACTCTTACAGCAGTTAAATATCAGATGCAACCTAAAGACAAATTCTCTTGAAGCTTTTATGTGTCCGATGTTTGCACTTGAAGGATAGACGTGTGGATCTAGAGAGTAATGGCTGTTTTTCTCCTCTCTGATGTTTGCAG
Seq C2 exon
GTGATAACATGTACAGCTGTGGAAGGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(4.6=100)
A:
NA
C2:
PF0044324=UCH=FE(2.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]