HsaINT1046128 @ hg38
Intron Retention
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr1:77721172-77721925:-
Coord C1 exon
chr1:77721831-77721925
Coord A exon
chr1:77721206-77721830
Coord C2 exon
chr1:77721172-77721205
Length
625 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAGATCTGTTTTATTTGCAGGTG
3' ss Score
9.57
Exon sequences
Seq C1 exon
GTTTGTTGTCTCATGTGTCCCTAGCTGGTTTTGGGGTCCAGTAGTAACCTTGCAAGATTGTCTTGCTGCCTTCTTTGCCAGAGATGAACTAAAAG
Seq A exon
GTAAGAAATATAATATCTATGGCTAAATTTTTGTAGGTAAATCTAAAATACTAGTGGGACTAAATAATAAAGTGTATTCATAAAAGCTCAGTTTTAAGACAGCTTAATAGTACATTCACATATTGGCATTCGGTTAGTGTCTACCTTGATAATATAAATATAACAAGAAAAATCACATCCTGAAGGAATTCATGTGAATTCCTGTAGTATAAGACAAATGATAAGTGAAATGTTTTAAAGCTGTTCTGAGATCCATAGAAGGGCAAACTCAACCAAAATAATGGACTTATTTGTGTGTCTGTAATTGTGAACTACTCCATATCATTTAAGGTCATTCACTATTTTTGTGTGTCTAGCACCTTGCTTGGACATATGACAGGCAGTCAGTAAGTTTTGTTCAATGAATAAATGGAAAAGATATTATTTGAGGTAGGTCTTCAATGTTGGCAGGAGTTAAGGGAGGGGAAGGTAAACAGTAACCTGATTCATGAGCATAGATTAAAAAAATGGAACCTTGTTTTTCTGTGCTGGGAGGTCAGCATGGGGCAAAATCAAATAATTACAGGACCATAATAAGCAATTTGCTGTTAATTTGAAACCAATGCCAGATCTGTTTTATTTGCAG
Seq C2 exon
GTGACAATATGTACAGTTGTGAAAAATGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254:ENST00000370794:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.1=100)
A:
NA
C2:
PF0044324=UCH=PU(7.8=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains