DreINT0173546 @ danRer10
Intron Retention
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:18029271-18032995:-
Coord C1 exon
chr21:18032890-18032995
Coord A exon
chr21:18029370-18032889
Coord C2 exon
chr21:18029271-18029369
Length
3520 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTTTCTTGTTCCCATAATAGAAA
3' ss Score
7.38
Exon sequences
Seq C1 exon
TGAGCATGATGTGGGAGAGGACGACATCTATGACTGCGTCCCCTGCGAGGATGATGGGGACGACATCTACGAGGACATCATCAAGGTGGAGGTTAGACAGCCTATG
Seq A exon
GTGAGTGAGCCACCATACGGACGACGCTCATTGGTGCGTGTGTGAGAGAGGTTATAGATGGATTGTTTTCCTGTCATTTTCCCACGGCTGTGCGCGAGTTCTCTTGCTCTGCTTACATTTGCTACTTTGCCTCCTTACTGCTGCAGATCAGATACATGCAGGTAAGTGTCATGCTGTACCGCACATAATTCTCTAACGCTCCCTGAGTGCTCTTCTTTCCTTTCCTTTAAATGTGTGTACGCCCTTGAGCCCTTTACTCATATATGAAGAACCTGCAGAGCTGATCCAGAGGCCCATTCACGTTTGCTTTCAATTTCACAGAAATATCTAATAAAGGAATAGGTGGCTCAACAATTCACTTTTTGCCATCTTGTGTTTACCCTCAAGATGTTTTGAAGATTGTTTTACCCTGCTGTTTTCTATACAGCAAAAGCATTTAGTGACAGGGGCCCCAAAAGATGCACTTGCTCATTTAAACATCCATGTGGAGATAATTGATGTCAGACAGAGGGTTAATAAATGAGACGCTTAAAAATGTGTTTGCGATTCATATTTATAATGCAATGGCAAGTGTCATTCTCAAACCTACAGAAGTTCAAGAACAATCAACACTTGTTATACAGACCTCTGATAAGCCAGTTAATCACCGGCCACTATATTAGGTACGTCTTAATAGTACCTGGTTTGACCCCCTTTTGCATTCAGAACTTTGTGGCATATATTCAACAAGGTACTACTGTAAATATTCCTCAGAGATTTTGGTCCATATTGACATGATAGCATCATGCAGTTGCTGCAAACTTGTCGACTGCACATCCATGGTGCGAATGTCCCATTCCACCACATCCCAAAGATACTCAATTGGATTGAGTCTGGTGACTGTGGAGACCATTTGAGTACATTGAACTCATTGTCATGTTCAAGAAACCTGTCTGAGATGATTCTCGCTTTATGACATGGCATGTTATCCTGCTGGAAGTAGTGATCAGAAGATGGTTCCATTGTGGTCGTAAAGGGATGGATATGGTCAGCAACAATACTCAGGTAGGCTGTGATTTTGAGACGATGCTCAGTTGGTACTAATAAGCCACAACTGTGCCAAAAAAATCCCCACACCTACCATCCGAATGTTGCAACAGAAATTGAGACTCATCAGACCAAGCAACATTTTTCCAATCTTCTATTGTACAATTTTTGTGAGCCTGTGCAAATTGCAATTGTAGCCTCAGTTTCCTGTTCTTGGTTGACAAGAGTGGCACCCAGTGTGGTCTTCTGCTGCTGTAGCCATCTGCCTCAAGGTAGAAGGTGTTGTGCCTTCAGAGATGCACTTCTGCATACCTCGGTTGTAACGAGTGGTTGAGTTACTGTTGCCTTTTTATCAGCTCAAACCAGTCTGGCCATTCTCTGTAAACTTTAGGGATGGTTGTGCTTGAAAGTCCCAGTAGATCAGCAGTTTCTGAAATTCTCAGATCAGCCCATCTGGCACCAATAACCGTACCACGTTCAAAGTCACTTAAATTGCCTTTTTTCCCATTCTGATGCTCACTTTGAACTGCAGCAGATCGTTTTCACCATGTCTACATGCCTAAAAGCATTGAGTTGCTGCCATGTGATTGAAATTTGCATTAAACAGCAGTAGGAAAGGTGTACCTAATAAAGTGGCCGGTGAGTGTATAACACCTTTATTTCCAAGAAACCTTATAGCTCAAGATTTAATGCAGCTTTTCTTTAAATATTGCGATATAGCTAAACTTTAATATAAAATATAGTCTTTTATACACATATATATATAGAAGCAAAATATATAAGACATTTTTACATTTAAATGAAGTTATTTTGTAATGTAAAAATCGAATCACTCAATAGTAACTACAGTATTAGCTAAACATAATATATACAGTAATTATAGTTGTGATATATGACACAATTGCGTAACACTGATTGTTGGGTTGGCAAAAGTATGTGGTTTTTGCGCAAGCCTGGTTTCAGCTGATACTTCTTTTTGTAAATTTTGAATGCATTTTAGTACAGAAATGTTGGTGAATCATAATTCTTTCATGGACATGAAGCACAAATTTGAATGTACACTTTATGTATGTATAGTGAATTGATCAAAACAAAGCAATAAAATTTTAATTTTACAAGCTTATAGCTAACTTGAACTAATTGTGTGGTACTTTTATAATACCATTTGTGTCATTTTCTGATAATTACAGCACGTGGCCTCTGTTAATATTATTTATAAAAGAGCTGCAAGAACATTCTGCATCCAACCAGATTTTTAGTTTTTTTTTTTTATGGATGACAAAGTCATGCAGGTTTGGATTGACGTCTGTTATGATGTCAGGCCATTTCTGATTATTTATAATTATTATTATTATTGTATTTTAGGTATTCTATTTTCCTTAAACATTTCATCATTCAATTGAAAAAAATACAGCTGAATGTATTTCATGGCTGGAGCATTTTCCTTTGTAAAAAATGAAAAAGGAGGAGAAGGTGACTCAGTGCTTACATGTCCATCTGAGCTAAAGAGAGTGCTGTCTCACCAAGTGAGCTAATGTTAGGTTATTTTAAACCCACAAGGGAGGAAATCCCTTCTTCAGACTGTCCCGCCTTCACAGAGAAATGCACACACACACACACATACAAAACAAAACACAAAGCAACTCGAAGGAAAGAAAACATAGAAAATAGCATCAGACACCCAGACATAATGCTTTCAGAACTGTTTTGTGATTTTGCAAATTTGATCTTTCTTCATACCACTCGGTATCCAGAGTCTACCTCTTTAAAATATGCATACATCCCTTAGTCCTGAACAGTTATAGATGAATTTGCCTTACCCGAATCTGTCTGCTTTCAGTGTTGCTAAGGGCGTTCTTCATTGTTCTTTCTTTCCATTTTTCCCCCCTTCACTCTAATGAAACAATTGTTTGTGGTCTTGAATTTCTCTGGATGTGGGCAGGTTTGCTTTGGCCTCATGCACTGCCAGACCCAGATGTTCAAATGTGTGTTCACTCCAGCTCTGGCCTCCAGCTGGCGTTTCTTTTCTTCCAGTGTTATCGCCACTTTCTTAAACAAGCTCACATCCCACTCGCATTACACCAATATCTAGTGATCAGACTTAATCAAATGCATCACCTTCTGTTAGATCATTTTCTGTTGTTATTGTCATGTGAATTGACCTCGTTAAGTCTTCATCAAAACCCTATTTATTATGGCTTTCCTGCAGTTGTTTTTGTGTTTTTGACTTAAATGTGTATGTTGTTTTGAATGAATGCAAGATTCAACTTTTTATCCTACAGTCCTTGTCAGCATTACCCTTGAGAGTTTGTTGTAAAATGCTCTTCGTCCACCTCTGTCTTTTACTGTAGTGTGCTTTGGCTATCCTGATTGTGACCTGAATTCCTTTAAATAACAGTTTGGTACCTTGCACAGGTGTTTAAAGGTGCTGAGCTGGTCTCTTGCGGGACAATACCAACATAATTTGTGTCTTTTTTTCTTGTTCCCATAATAG
Seq C2 exon
AAAATGGGCATGACTGAAGATGATAAGAGGAACTGCTGCTTGGTGGAAATTCAGGAGACTGAGGCAAAATACTACAAGACACTGGAGGACATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718:ENSDART00000143987:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062115=RhoGEF=PU(11.5=60.6)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]