RnoINT0162660 @ rn6
Intron Retention
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5845146-5847942:-
Coord C1 exon
chr3:5847840-5847942
Coord A exon
chr3:5845245-5847839
Coord C2 exon
chr3:5845146-5845244
Length
2595 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
ACAGGCCCTGTCTCCTCTAGAAA
3' ss Score
8.5
Exon sequences
Seq C1 exon
CGAGCATGACCTGGGTGAGGACATCTACGACTGTGTCCCGTGTGAAGATGAAGGAGATGACATTTATGAGGACATCATCAAGGTGGAGGTGCAGCAGCCCATG
Seq A exon
GTGAGCACCCCACCCTCACCCCCCAACGCCACCCCCTCTTCCCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCCTCCTTGCTATGAGCAACTGAACCTTCCCATGGGAGCTGCCTGAATACAGACCCAGGTCCTCTGGACTCTCCCTGGGGGTGGGGCCACTCCCCTGCAGTGTCCTTGCAGCCCTGTTGAGACACTGTGAGGGGCTCCATGACTGTTGGGCTCCTCTAGCAGAGTGGTTATTTTCTTAGAAGGGTCATAGTCCTGCCTATCCAGAGAGCTTTAAAATAGTAACTCTGTATTCAGTCTAACACGGTGCACACATCATTGTAACTCTTTGTGTGCACAATGAGGAGGCCGGTGCGGGCTCAGGCGGCCAGCTGCGCGCCTTTTATGTTGAAGGGTATTTATTTTCACGCAGCCTTGGCTAATGATCTTGCGGACAATGGTTTGTGCCAGCTCTGGCTTATTGCCAACAGCTGCTGTATGGAGGGTGGGGGGTCTGCCTGGAGAGATCCAGGGAGGGGGCCCTGGAGGGGCAGGCCACAGCTCCCACAGACCCCTGCACTTCCCCAAGGTGGGCACCTTGCCACTTGTCAGTCGGCGGAGGCTTTTGATGCATGTGTGCTCCTGAAGGAGTGGGAAATTTATCAAAAGCCAATATTTCTGTCTCCCATCTGTGTGGGAGCCTCCAGCTGGTGGCAGAGAAACAAAAAGCCGGGAGAAGAATCCTAAAGAGCCCAGAAAGCCTTTCCCAGGCTGCCGGTATCCTGCTGTGTCCCTGGCTTGGGAGGAGAGATGCAAGGCTATCCTGGGGTATTGCAGCTCCTCACGCCGCCCTTGAGAATGTGCACCTTCATCCCAAGCATCTAATGATTAGTCTTTCCCCATCACGCTCAGGGCTCTAGTGCGTGTGGGAAGAGGCTTCACTAGTCAGCTCTGCTCCCCAGCCTTGCAGAGAGAGAGTGTCTGATCAGGGCTTCCCCAGAGCTGGCCTGCTGTGGCCTAGGAAACCCCACCAGGTTGAGTAAGGCCTCTCTGAGGGTAAATATCAGTTCAGTATGCAGGCACAGTGGTTTGTGGGCATATCTGATGTGCCCAAGCTGTCCTGCTCTCCTGAGACTCCTGCAACAGTCCCAGGAGCCTGTCACTGTCCCTGGTCCTGAAGGACCCACGACGGGAACATGTCTTGAAAGAAGACAGCCAGTGTTCTAATACCTAGCACTGGTGTTGGATCTCGTCCAGTCCATCCACAGAGGGGATGTAGGCTTGCTGTGAGGGGTCTCTGAGATAAAACAAAGGGTTTCCCACTTCTCATCCTGCCTGGGACTGTCTAAGAGTGAGGTCATTGGCTTCACTTGTGTATAGTGAGGTAAAGGCAGGCTCTGTTTTCAGAGTCCAGGCATGGGAGGATCAGCAAGGGGACTCCAGTCTTATGCTGTGTCCTGACCGTTCCCCAGCGGGCTCTGGGGGGACTATGACATGGCTGTTGGGGCTGGAGCTGACAGTAGGGTGGGCTGTCGGTGGTGACCCTTAATTCCCAAGCGTGGCTTGAGGACAATGGACACTGCTGACCGGTTCAATCTTGTTTGCTCCTCCATGCATTCAGATCAGATACATGCAGGTAAGTTGCAGGTAAGACCAGCTAGGTGGGTTCCTGCCAGCTTCCTTCCACCTGTTGGGAAGGTGTCAGAGGCCACAGAGAAAGTTAAGGACCATGTTGGTGAGACACGGTCAGGCACACAGGGTTGGAAAGGATCTTGGGCTGAGATCCCCCTCGTGGGCCTCAACCCTACCCTACTCCATGCTGCCTGAGATACCGATGGGCCTCACCAAGTCCTCACGCCATGTTGCACAGTGCTTTGAGTTGCTGTGATGCGGGGCAGAAGGGGTTCTTGGACCAACAGGAGGGTAGCTAGGTGGGCATTTGTCCAGTATTGGCTCTTCAGAGTCTTTGGGGCAGACCAGGCTCTCTGAGCTAAGTGACCCCAAAGAAAGCAGCTTTAAAGCTCATCACAGTCTCGCTCACTCCACCATGTGAGGCACTGTGCTCCTGCTGTAGAGGAATGTCCCCAGGTGACCCCCTGCTGAACTGTTACCTCAGGCCTTCTGGTTGGAGGCCTTCAGCTCCTCAGGGAAGTCTGGCCTTTGGGGCATTTGGTGTTTGGAAGACAGAATGGGTCAGCTGTGGGTGTAGCTCCAAGGAGTTAGCCAATGCCAGCTGCTGGACAGGGCTGACCCACTCAAGCACGTGCCGTGAGCACACCTCACCTGTATGTGGTAGGACCCGCTCCCGAGGCTTTTGTTCCAATCTGGTGGGGACTCAAGGTGAGCGGGTACCCAGCAGTCTTGAAGCCTTGTGCCTTCCTTGCTGCTCTTAGTCTTCTTCTGGCCAAGTGCCTCGGTTTCCTCGAACACAGATAATGAGGAGGGACTGTGGCCTCACTGTATACTCAATAATCCTGCGACCACACTGGAAAGTTGTCATCCTGTTGTGTAGGCAGGTGGCCGGCAGTGGGTACCTGGATGGCCAGGTGGTGGGATCCTGGCTCACAGGCCCTGTCTCCTCTAG
Seq C2 exon
AAAATGGGACTAACCGAGGACGACAAGAGGAGCTGCTGCTTGTTAGAGATTCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422:ENSRNOT00000009893:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062115=RhoGEF=PU(11.5=60.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]