HsaINT1046279 @ hg38
Intron Retention
Gene
ENSG00000160293 | VAV2
Description
vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr9:133809040-133810205:-
Coord C1 exon
chr9:133810191-133810205
Coord A exon
chr9:133809139-133810190
Coord C2 exon
chr9:133809040-133809138
Length
1052 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCCCCCTTCCCTCCTCTAGAAA
3' ss Score
11.36
Exon sequences
Seq C1 exon
ATTAGATACATGCAG
Seq A exon
GTGAGTGGCCCGGAAGGGGAGGCTGGGGACGTCCTGCCTGCGCCGTCTTCTTGACCTTTCAGGGAGGTCTCAGACCTCTCTGAGAAAACTCGGGACCCTGCCCCCAGGAAGACATGGTCAGGCACACATGACTTCAGGCATCAGAGACCCTCGGCACCCCCGTGGTCCTGTACCCACAGCCCCATCTTGCACGTTGCCTTAGAGACCTGCAGCCTGGCAGACCCAAGCGGACCCTTGGGGATTTCTTGGAGGATGATGATGGTCTTAGGGCCGACACGAGCGCTGTGGGTCACAGCACCATTTCTCCAGAGCCTTCTGACAGGTGGGGTTTACCCAGCCTAACAGAACCTTAAAGACAGTGTTGGGAAAATCCATCACTGCCCCACAGTGACCCCACCTGTCACCTCACCCTGGACCATGGGCCAGGCAATCTCTAATCCTGTCCCGGCCACATTCCACCAGAGGTGGGGGCAGGCCCTGCTCTGGAGGAGGCTCCAGGGACCCTGCTGGCGGTGGGGGGTCATCTCAGGCCCCCTGGCTAGAAACCAGTGGACACTCAGGGGAAGAGTCCAGCCTGCAGGTGGCTGTACTGACATGTGCAATGGTGGATGTGGTCTGCATGGAGCCGAGCACACAGTCTGCCACGTAGAGAGGACTTATGCACACAGTAGGTGTTTTAGCAAGTCACTCCTGCTCCTGTGCTGGAGGGGGTAGCTTCTGAGGCCCTCACCCCAGTCTGGTGAAGAATCGAGATTCAGAATCAGAGGAGTAGGAGCCTGGGATTCTAGAAGGCTCTGCCTCCAAGCCTTCCTTGGCACTGTCCCCACGTCACATCCCCTCCCCGTGCGTCAGTTTCTTCATCTGCAAAATGAATGGGAAGGGGTTGGCCCTCTCTGTCACCCATCTGGCTGCAGCACTGCACACTCAGTGACCTCGTGGCCAAACCCAAGGAGTCCTCTTTTGTGGAGGTGTCCGGGTGTCGCGGTGCAGATGTGCAGGTGGCAGGTGGCCGGGCCCATGGGGTCCTGCTGACTCCCCCTTCCCTCCTCTAG
Seq C2 exon
AAAATGGGCATGACTGAAGATGACAAGAGGAACTGCTGCCTGCTGGAGATCCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160293:ENST00000371850:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062115=RhoGEF=PU(11.5=60.6),PF084296=PLU-1=PU(8.5=54.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains