DreINT0173578 @ danRer10
Intron Retention
Gene
ENSDARG00000075962 | vav3b
Description
vav 3 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-070912-251]
Coordinates
chr2:16437845-16440340:-
Coord C1 exon
chr2:16440275-16440340
Coord A exon
chr2:16437948-16440274
Coord C2 exon
chr2:16437845-16437947
Length
2327 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
GTGTGTGTGTGTGTGAGCAGCGA
3' ss Score
5.54
Exon sequences
Seq C1 exon
GTCGTTTCCCACAGAGGAAAGCACTGAAAATGAAGACATATACATCCATTTGGCAGATCTCATCGA
Seq A exon
GTAAGTATGAATCTCTCCCTCAGTCGGACAGTTGTTTTTGTTTGGAAGAAATGAGGTGCTAGTTTTAAACTGCAGATCATTAGTGTTTGTGGTTTTAGTCACCCACGTGTATGTACGTGTTTTGTTTCTGATAAACTCTTGAATTGAACAGTTCATATTTTCAGTAATATGACATCTATAACCTACTTCTGCGCTGAGTGGGATGAATGTGAATGACTGATTAATAGTAAGTGTGGAAACAGGAAGTTGTGTTTCCTTAAAAACTGAACCAAATGTACCCCAGTGCACTGAATTATAATAATCTTATAACATGATAACAGTGGGTATCTCTATATAATCATCTGATATTTAAACGTATGGTGGTGGATTATGGATGCAATTTTTACATACTGATGTGTATAATATATATATATATATATATATATATATATAGCTTCTCCTGATCATCAAGACTGCATTTATTTCATCAACAATACAATACAAATTCTTCTTATATATAAACTTCTTATATATATTATTCTTATATATTATATCTTATCTTCGTATAAGATATAAAACAAATATCTTTGTTTTACTTATATTTAATGATAATTTTTTACGTCAAACGACAATTTCAGTTTATTAATTTCTGTTTTAATCAACTCCATAAGTTTTGGTAAATTATCCCCAGAACAAAAGATACTTGTATCATCAGCAAATAAAATAAACTTAAACAACTCTGATATCTTACACATATCATTAATATAAATTGTAAACAATATCGGACCTAAAACTGATCCTTGTGGTATGCCACAATTTACATTTAGATATGACGATTTATAGTTGCCAATCTCCACAAACGGTTGCCTATTTTATATATATGATTTTCATGATAGGAATTATAGAATAGGAATAAATTGACATTGACTGTAGTTTGGAATCTCACAAAATGTGGCAAATTTTGAAGACTACATTAACAAATTAACGGAAGTAAAGACATGATCACATGAACTTTATTTCCAGAGCTGCTCTGCCAGTCAGCAGTATTGAAATGTTTTATTTGCGGAAAAATAACAACACCAAACAAAAAGTATTGTCCATATAACATAATAAAAAGTCGTTTTACAGAGCGCTTAAATTTGGGGAAATATGGACCAATTGTTACAGTAAATATAAATACAATTTTGTAACCTGACCCTACAACTGTCACTCAATAGCAAATATATATTTGGTCGAACAGTGAATTTGAACATGATTTCTATGGGTCATCAAAATGTCTTAAATTGTCCAATAGTAATTCGTACTTCCACAATAAGGCTATTGGCAATAAGGTCTTAAATCTGAGGTTATAAATTAACACAGTCATAGCATTAAATGTTCATGCATAGACACATTTTCAAGTAATTACCTTTTTCAATCATTTTTAAATTATTAAGAATTAAGTTGAAATAACTTGTAAATTTCATTTAATCCGAAAATGGAAGCAGCACTAACTGTATTCCTCAGTATTTTGATTTGCAAATGCAAATATCTAAACGTTACAAAATCAAGATTTATTTACTTGAGACAAAATAGTCAATTACTTTAGATACTTGAGATAAAATAAAGGAAGTCAGAACAAAATGAAGCGAGACTTGCAAAATTATGCTTAAAAAATAATAAATACCTGGCGGTGGGTTGTGAAATTACTTTTCAGTTGAATGGTGCATTCTGAGCATACCGACAGATATTTGTTCTTATTTTTTATAATAAACTCATTTCATTACTTTAATAATTACTAATTTACTCATTACTTTCATAAAAGACTATAATCTTATGTCAACTCATTTTGCTTCCCGAAACATCATAACTTAATTTAGGAATCTTTAAACATTTTGCATTGGAATGCAAGACAAAAATATTGAGAAAGACACAGCACTTTTTTTGTAGTGTGATCAGAAGGTACAAAGAAAAGTTTATTTTAAATGGTAAATGTTTGAAGTGATTCAAACCTCTAAGGTATAAAAAGTAACAAAGAACAGTACAAAGTTTCCCTTTCAAACTTTGAAATGTTGTATATGCAACTCATTGTGTTCTCACTATAAATGTACACTTTTTAGCATAATACATAATAACATCATAGTGTTTCCATCAAATAGATAATTTAGTTATTTCCTGGTCTTAAAATGTTTATACATTTATATCATCATAATTATCGACACTGATATGACAGATATTATCATTGCCTGTATTTACCAACCCACCAGTAGTTACAATGTGTTTTTTTGAATAGAATTGTTGTATAATCATATGGTAATGATCTGATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCAG
Seq C2 exon
CGAGGAGCTGGAAGAAGATGTTTATGACCCTGTGTATGGAGACATTGAAGGAGGAGAGGTGTATGAGGACCTGATGAGGACTGAAGCTGCTGTGTCTCAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075962:ENSDART00000110059:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]