GgaINT0039971 @ galGal4
Intron Retention
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:1078810-1080658:-
Coord C1 exon
chr8:1080593-1080658
Coord A exon
chr8:1078919-1080592
Coord C2 exon
chr8:1078810-1078918
Length
1674 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGT
5' ss Score
5.66
3' ss Seq
TTCTTCTTTTTCCTTTTTAGTGA
3' ss Score
11.44
Exon sequences
Seq C1 exon
GCCCTTCCCCACAGAAGAAAGTGTTGATGATGAAGATGTCTACAAATGTCTTCCTGATTTGATAGA
Seq A exon
GTATGTTGTAAACCTGTAGTTAAATATTTTGCATTTCAGTTACACACCATTATTTTTCTGATGTTATAGAACACATAATTTTAATGAAAAAGGGGATATTAGTTTTTTTTTTTCGGTTTGCCATTATGGTGACCAGAAAGAATTATGAACGCTTATCTGAAGAGTGTAATATATATATTTAAAGAAACATGTTTTGTAAAGGGTTCTGTTAATGAAGTGAATCATGCATGCATTTTTGAATTATCTGTCTGAACAAGGAGAATGCTTTCAGAGAACTATGGTACCAGTTTTAAGGAACCCAAGGAAATTGTCTTAATTTTTCAAAGAAAATTCAATGAATTTCTTCGTATATATGTATTTACCTTTTTGGGTGTTTGCAGGATTATTAATTATTGCAAATTTTCTGCATTGGCTTAGAGGCAGGAGTAGGATAGACATGAAAATACTGTATAACGGTAGTTAAGACTTCTCCATATGTCTTAGGAATCATGCTGGATAAGAGCTAGGGTCAGAGTGTGCTGTCCCGAAGCTTAAATTACACCAGTGTTTGGTTCACTGGTCTCGTCCCCATCCTGCTTTCTTTGCCTGTGTCACATTGTAGGTTTCTTGCTTTGATGTAGCTGCTGTTCATACCATGGATTTTTCTTCTTTACTTGTCTATAAAGAAGAAAAAATGCTACAGTGGAGTTTATGATATGCTTCCTGGGTTCATGCAGACAGTTAAGTTACTGAAATAATTGTCCTTTTTAACTGTAGTCATGTACCTGAGTGGGTTGATTTTTTTTTTTCTTTTCACTCTGAAGAATATCAGTGTTATCTTCCTACAAGAAAATCCCCAAATTATTAGCAAATGTGAGCCAAGTCTCTGTATTATGATCAAACTACTTTCATTATCTTTAAGCTGTTTTCTAGATGTAATCTAAGAAATGTGAGTGCAAGAGGTTTTATGGACTATGTACAGTCTTAATGCAAATTAAGCAAAACTCCTACAGTGCTGACTCTAATGAAGCTAAATTACCTCAGGGCAGAGTTGAGCATTGACTTTATGTGGAGCTAATTATGTTGTCTGCATATTAGGACATTTCTTTTGCGTTGTTTTGATTTTTCTTTTTTTCTTTTAAATACCTGATTTTAAATAGGAAAGGGCACTTCATCATTTTGGGTAGCAGAAAGTTGCTTATAGGATGGAGGTACACACTCTCAGCTGCTTGCTCTGCAGTCTTCACTATATTTTACCTCCAGATAGGCGGGAAGGAAGCCTGTGCCACTGTCCTGCATTACAGTGGGATGCCAGGTAGTCAGAAGGGACGGCTTCCCTGCCTCTGGATGTGGTGGGGAAAGGGATGAAAAGAAGAGTGGGACTGAATGGTATGTCCTCACACAACTGTCCTGACAAGCTGCTTTTAATGCCTAGCTGATTTTGTGTGGTTGTAAGTTCATTCAGTCTTCATTATTGTGTTGATCATACAATCATAGTTTAAATCTGTTGAGGAAATAAAATTAGTGGACTGAATTTTCCTTTATGGATTCTCTTCACTGGCTACTATTAATTAATCTCTTTATTTACTACAGCAATTTTTTTTGTATAAAAAAGACTCCTTTGCAGAGCTGGCATTGTAACTTGCCTGTGCTGCACAGCTTTTATTTTTTCTTATTCTTCTTTTTCCTTTTTAG
Seq C2 exon
TGAAACTGGTGTTGATGAAGATGAGGAGCTGTATGATTGTGTCTATGGAGAAGATGAAGGTGGGGAGGTTTATGAAGACCTAATGAAAGATGAAGCAGCACAGCAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915:ENSGALT00000002946:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.270
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]