DreINT0173766 @ danRer10
Intron Retention
Gene
ENSDARG00000040466 | vil1
Description
villin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-799]
Coordinates
chr9:45112497-45113548:-
Coord C1 exon
chr9:45113480-45113548
Coord A exon
chr9:45112653-45113479
Coord C2 exon
chr9:45112497-45112652
Length
827 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
TGAAAATGTCTTGTGTGCAGGAT
3' ss Score
7.55
Exon sequences
Seq C1 exon
GAAGGGAAATCTTACGACCAGCTTAAAGCAGAGCTTGGGGATGCAACTGATGTTATCAAAATTACTGTG
Seq A exon
GTAGGTTCTTTTTCTTCTTCTTCTTTTTTGGACAGGGCTAGCAGATAATAGCAATTGGAATTGGTTTTATAATCTAACTCAGGGGAGCACGGTGGCTCAGTGGTTGGCAATATCACCTTACAGCAAGAAGGTCCCTGGTTTAAGTCCTGCCTGGGCCAGTTGGCATTTCTGTGTGGAGTTTGCATGTTCTCCCTGTGTTCATATGGGTTTCCTTCAGGTGCTCCAGTCTCCCCCACAGCCCAAAGACATGCAGTAGAAGTGAATTAAATAAACAAAATTGGCCATGATGTATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGTGAGGGTGTGTATGGGTGTTTCCCAGTGATGGGTTGCGGCTGGAAAGGCATTCGCTTTATAAAATATAGTTGGCTGTTCATTCTGCTGTGGCGACCTCTGAAATAGAAACTAATTTAACCCAGTGTTTCCCAACAGTACAAAATTTTAACCTCTTCCATATTAAACACAAATTCAACTCATCTGAATATTAGAATAGACTCCAAAACCTGAACTTAATGGATCAGATAAGGATGACATCCAAAATATGAAGTGTTAGTGTGCCTCCAGGAACAGGGTTGGAAAACACTGATTGAACTAATAAACAAACTAATATAATATACATTGAATGTTCTTTAAGATGTTTGATTTGTGCACAAAACACCTGCCAGATTCATAAATGAACACGTGAAAATGTCTTGTGTGCAG
Seq C2 exon
GATCTGACCCAACCATCCTCAAACCAAACCAACTCAAGTAACTCAACTCAAGGAGGTTCGATGCCCCGTCCTGTAACACAAACCTTTCCTGCAGAGAAGCTGGTGAACGTTCAGACAGAAGACCTGCCTGAGGGAGTCGACCCCACAAGAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040466:ENSDART00000059228:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.981
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGAAATCTTACGACCAGCT
R:
TTTTCTTGTGGGGTCGACTCC
Band lengths:
222-1049
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]