GgaINT1029666 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22032880-22033270:-
Coord C1 exon
chr7:22033202-22033270
Coord A exon
chr7:22033018-22033201
Coord C2 exon
chr7:22032880-22033017
Length
184 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CCTTGTCCCCCCTCACCCAGGGG
3' ss Score
8.48
Exon sequences
Seq C1 exon
GACAGGAAATCCTACGATGAGCTGAAAGCTGAGCTGGGGGACAATGCCAGCATTGGGCAACTTGTGTCA
Seq A exon
GTGAGTGTCACAGGGAGAGGGGACAGCTGGGGCAAGAGGGGGCTCTGGGAAGAGCTGGGGGAGGGGAAGGGACTACCAGTGCTGGAGCTGCAAGACCATTTTCACATGAAGGGACAAAGGTGTCAGTCCCCTAGAAGGCAGCCTGGTAGCTCTGTCTGATGTGACCTTGTCCCCCCTCACCCAG
Seq C2 exon
GGGCTCACCTCCAAGAATGAGGTCTTCACAGCCACCACCACACTTGTCCCCACCAAGCTGGAGACCTTCCCACTGGACGTGCTGGTGAACACTGCAGCTGAGGACCTGCCCCGGGGTGTGGATCCCAGCAGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.239
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAATCCTACGATGAGCTG
R:
CTCCTTCCTGCTGGGATCCA
Band lengths:
206-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]