DreINT0175362 @ danRer10
Intron Retention
Gene
ENSDARG00000016903 | wdr5
Description
WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
Coordinates
chr21:18249949-18250221:+
Coord C1 exon
chr21:18249949-18250023
Coord A exon
chr21:18250024-18250133
Coord C2 exon
chr21:18250134-18250221
Length
110 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
GGCTTGCTCTTTATTTTTAGTGG
3' ss Score
6.92
Exon sequences
Seq C1 exon
TGCCTGAAAACTTACACCGGTCATAAAAACGAGAAGTACTGCATATTTGCTAATTTCTCTGTTACTGGTGGAAAG
Seq A exon
GTTTGTTGGCTTTACACTTTTCTAATCCATTGCCTCTCTTGACATGCTAAAACTTTTCGACATGAGCATGTGAACTGAAATGGTGATAAAGGCTTGCTCTTTATTTTTAG
Seq C2 exon
TGGATTGTCTCCGGCTCAGAAGATAACATGGTCTATATCTGGAACCTTCAGACCAAGGAGATTGTACAGAAACTACAGGGCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016903:ENSDART00000019750:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(57.1=100)
A:
NA
C2:
PF0040027=WD40=PD(33.3=46.7),PF0040027=WD40=PU(26.8=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGAAAACTTACACCGGT
R:
TGTGTGGCCCTGTAGTTTCTG
Band lengths:
162-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]