GgaINT0124976 @ galGal3
Intron Retention
Gene
ENSGALG00000002659 | WDR5
Description
NA
Coordinates
chr17:7887828-7888387:+
Coord C1 exon
chr17:7887828-7887902
Coord A exon
chr17:7887903-7888299
Coord C2 exon
chr17:7888300-7888387
Length
397 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ACTTTCCTCTGTCCCTCCAGTGG
3' ss Score
10.61
Exon sequences
Seq C1 exon
TGCCTGAAGACGTACACAGGACACAAAAATGAGAAGTACTGCATATTTGCCAATTTCTCTGTTACCGGTGGAAAG
Seq A exon
GTTAGTGTTTATTTGGGCTGCTTTTCACTGATGTGCAGTCCTTACTGCTTTTCTCCATGGGATGGGTAAGGCTGATACGATGCCAAACTTCATTCTGCTGTCTGAGGGTAGGATGGTGTTCTCTGGTTGAGGTGGTGGGACACATCAGCAGAGGTTGAACTCTCATGTAGTGCCACCTCAGCATCTTTCACTCCTTTAGTTTTCCTCCTCAGAAAAGGTTGAACAAAACTTTCTGCTGCCTGTATGCTCTGAATACGCTGAGAGACAGTGAACTGCAGCCAACAGTCATGTGGTGTTGGACCTTCCTTCTAGTGTAGTGACAGTGGAGTGTTTGGAAAGCAGTAGCAGTTGGATATAGATGAAGAGAGATTAAAATGACTTTCCTCTGTCCCTCCAG
Seq C2 exon
TGGATTGTATCCGGTTCAGAAGACAACCTGGTTTACATCTGGAACCTTCAGACAAAAGAGATTGTACAGAAATTACAAGGGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002659:ENSGALT00000004189:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(57.1=100)
A:
NA
C2:
PF0040027=WD40=PD(33.3=46.7),PF0040027=WD40=PU(26.8=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]