MmuINT0175376 @ mm9
Intron Retention
Gene
ENSMUSG00000026917 | Wdr5
Description
WD repeat domain 5 [Source:MGI Symbol;Acc:MGI:2155884]
Coordinates
chr2:27388857-27389375:+
Coord C1 exon
chr2:27388857-27388931
Coord A exon
chr2:27388932-27389287
Coord C2 exon
chr2:27389288-27389375
Length
356 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTGTTCTTTCGATGCTGCAGTGG
3' ss Score
5.51
Exon sequences
Seq C1 exon
TGCCTGAAGACATACACTGGCCACAAGAATGAGAAGTACTGCATATTTGCCAACTTCTCCGTGACAGGCGGGAAG
Seq A exon
GTGAGTTTCCACTGAGATGTTGTTATCCTGCTAGCTCTCTAAGAGGCCACCCATCACAGGTGGCTTTTTGTCTTTATGAAGCATCCCTAAGCCTATGGAACAAACCCACACTTGTCGTTTTGAATGAATCTGTGGTGTGTTGCACTTGGATATGGTTGAAGATCTAAGAGCAGGTGGTGACTGGATAGATCCAGTGACTGAGGGTGCCGTGGGAGGCATTTAGCATGTCCCTAAATTGGGGAAATAGGTATTAATTAGAGTAACCGCAGCCAGCTTGCCTGTGCTACCTATTCAGCATATCACCTGATGTCTTTCTTGCCTGTCCTCACTGCCTGCTTGTTCTTTCGATGCTGCAG
Seq C2 exon
TGGATTGTGTCTGGTTCTGAAGATAACCTGGTGTATATCTGGAATCTGCAGACCAAGGAGATTGTGCAGAAGTTGCAGGGTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026917-Wdr5:NM_080848:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(57.1=100)
A:
NA
C2:
PF0040027=WD40=PD(33.3=46.7),PF0040027=WD40=PU(26.8=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: