DreINT0175636 @ danRer10
Intron Retention
Gene
ENSDARG00000090418 | wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061110-97]
Coordinates
chr6:11777495-11780913:+
Coord C1 exon
chr6:11777495-11777588
Coord A exon
chr6:11777589-11780879
Coord C2 exon
chr6:11780880-11780913
Length
3291 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
CACTTTCTCTTTCCCCACAGATC
3' ss Score
13.71
Exon sequences
Seq C1 exon
GCATTAAGATGCAGCTCGCTCACACTCTGACAGGACAGTCTGCTCCGGTTCTGTCCTGTGCTTACTCTCCTGATGGACAGATGCTGGTGTCTGG
Seq A exon
GTCAGTATTAAACACATGTACACTGCAGGAACTCTAAAGTAACATCATCTTTAAGTTAAAGTACCCAATTAATGCTATTTTTTTATTGGTTCCTAATTTAGTTTCAGATATCTCTTGCAATCCATTTAAAGAAATAAAAAAGAAAGTCATTGAATAATATACATTACACCTCTTTTCTCAGTGTTTGAAATGGTTTGTTCAATCTGTCAGCGAATTTAACTTCTGGGCAAAACTGAAATATCGCATCAAACATTTGTGAAGTAAGCATCACTTTCTGATTATACTGGTGCCACATATTAAAAGTAAACTGGAATTTGCTGCATTTGAAAAAGCCACTGTGGGTCTTCTTACTTGTATAATAAACTACATGTGCCTCAGAAAATAAAGATGAAACTAATTAACTTTTGGGAGCACAGACACTAAAGGCAGTTCTGGGAGGTAATAATGTTAAACCACTTTTTTTGATAATGGACTTTGGCTAAGAGATATTAGAATGACCAAAGTGAAGTTTATTTATAAACTCATTTCATGAGGATCACATGCTTATGATTGCTTGCAGCTGCCCCCGCTTTATTCAACTAATGATTTACCAATCAGACGATTCCTAAGCCACTATAAATACCCTAAGTTCCATATAACTGCCATCTTTGTTTTGAAGAATCTCCCCTTCCACCCCTACTCCTCCTCCTCCTTTCCTAGATGGGTGGCATGATGGCCCAGTGGTTAGCACTGTTGCCTCACAGCAAGAATGTCACTGGTTCTTGTCCTTACCAAGCCAGCCAACGTTTCTGTGCGGAGCTTACGCATTCTCCCCGGGCTCATGTGGGTTTCCCCCAGGTTTCCCGGTTTCCTCCCACCATCCAAAAACATTCAACTTAAGTTAATTGACTAATCCAAATCTGCACCATAGACATGTTCCTAGTAAGTAGTTATCTCTTAAGAGCAATCACTATCTGTTCATTAGCTAATACAGCAGGGGAGTTCTCGAGATCTACCTGAGCTCAAACTCCCCTCTTGCAAATGGGAGGGAGCCAGGGGCACGAGGATCTTATGAGCTCAGGGCTCTCTCCTGAACAGCTTGACAAACAAGCTTTATAATCAATCATCAGCTAAGTGTGATTTCTTGAAACAACAATTCAGATGTTTTGCAATGTGGTCGGTCCACTTGCTTATTCATTAATACCATCCCATACACTTGTTACAACATGATCTGTTAAAACAAAATAACATGACTTTTTTGATGCGCATGCTGGTATTTATTTAGTAAATGTGTTTCCATTATAGTTTAGGCACATTTATTTCTTATCAAATAAAAAAAAAACTCTTTCTATTTCCATTAAGCATTTTTAATGCAGTATTCCAAAATGGCATACAAATGTGTGGATGAAAACAGATAATTACATTACAGAACTAGACTTAAGCACCAAGGCCAAAACAATGCTGTTTTTTTCCATTGTCAGACCAGTAGCTTGAAAGTGCTGCCCTAAAACCTGTTCCTAAAACATGCCTTAAGGAAGAAACAGCATACAATTTCACCAGTGATGGGAAAAATAAATAAAAGCTGTGTGAACACACATGCTAAATGCAAATGTCTGGTCTACAGATCTACACTTTAGCATCAACACATGAACAATATGAAGGACAAAACTTGCTAATGAGAACTTATAAATCAACTTGCTAATGAGATATGTCAATCATCAGAAGCCAGTCAAAAAATCGAGTGCAAAACTTTTCTAACGACCAACCAATGATGGCATAAAAACCACCTTCTGATGATTGATAGGCACCTGCTCATTAGCATGTTGACCTGAGGAAAAGTAAATACGAAACTACATTCAAGACTGAATAAAGGTTTGAAAGGGGAAAAAAATTAAGTTTCAGTTGAGCATTTTCCTATTCCTCAACTTTTGTGTAATTTATTTAATTGTTTACATGCCCGCACCATTAATTGTTTATATATTTATTCATGCAGGAATTTTTGTATTATGTATTTATTTATGTATTTGCATATTTATTTTATTTATTTTTTATTTTATTTATGCTGGAATTTATGGATTTATTTCATTTATTGGATATTTTTTTAATTTTGCAGGTTTCGTCCTCCATAGACCAACAATTTGCAGTAACACTCTCTATTCTGTAAATTAGGGGCTTGTATGTACAAGAAGCCTAAAAGTAAATTAAAAATAGACCATCCGTTACTCATTGTAAATATTTTAATTGACTCCTATGCCTAATCTACGCTTGTCCATTTATCAGCCAAATGACTGGGGATACAAACTTTTCACCTTTCTGCAAAATTCAGCAATTTAAATGAAAAACAACTGTTGTGTGTTATAACTAATAAACTCAACTGTAAAAAATACTGTAGTATATTTTAGTTTTACTACAGTAAGATGTGGTGTATTGTAGTATGTTATACCTTATAATTGTAGAAAACTACAGTATGATGCAATCCTTTCTTTATGAGCTGGATGCGCAGAGGTAAATGCATATTTTGATAGGGAGGTTGGACAGCCCATCGTAATGTTCAGGCCAAATGTTTTGATTCGGACAAACTTTTCTTGGTTCTACACTTTCCAATCAATATTAAAAAAAAAACAAACATCTAAATATATAATTTAATGATTGCTATCAGAATGTAAAGAGACTTTTAACCAGCACAACAAAAATAGTTTCTTAAGACAATCTATCAACCTATTGAACTTTAGTAGCGAGATAGTTCACCCAAAAATGAAAATTGTCATAATTTACTCGCCCTTATTTCAAATCTTTATAAGCCTTTTTGTTCTGCTAAACGCCAAAGAAGAAATCCTGAAAAAAGCTGGAAACCTGTAACCACTGACTTTTTTTGTTTTTTATGGATAATTGTTGTTGTTAGTATTTGTTTTTCCTACAATAAAAGTCAATACTTTTGTGTTCAACATAATAAAGTAATTGCTAAAGGTTTGGAACTACTTGAGGCTGAGTAAATGGGGAGAATTTTCATTTTTGGGTGAACTATCCTTCTAATTTTATCCAGAAAACGCCACCAAACTCTAGCTCGCAGTTCCTCTGTTTTCCGCTGGGTGGTGCTCTGCCGTCACAGACGTCAGCAGTGTGAAGCACAAACGATGAATGCGCGGCGGTGCTGCTGACGTCTTTTTGCTAAATAACACACTCTGATGAAATGGATTGTTCATCCGCTGTGTGTCAGCAGACAGACAGACTCTCGATTTTACTGCACATAAAGGCCACAGAGAGCCTGTCTGACTCAACGCCTTTTAAATGTCACTTTCTCTTTCCCCACAG
Seq C2 exon
ATCAGTGGATAAGACCGTCACCGTGTATCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090418:ENSDART00000121431:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(71.8=87.5)
A:
NA
C2:
PF0040027=WD40=PD(25.6=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]