DreINT0176199 @ danRer10
Intron Retention
Gene
ENSDARG00000102414 | wu:fd14a01
Description
wu:fd14a01 [Source:ZFIN;Acc:ZDB-GENE-030131-5336]
Coordinates
chr22:281815-282245:-
Coord C1 exon
chr22:282120-282245
Coord A exon
chr22:281986-282119
Coord C2 exon
chr22:281815-281985
Length
134 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TTTATTGGCTGATATTTCAGGCT
3' ss Score
4.04
Exon sequences
Seq C1 exon
AATACAAGTCTTATTAACACCAAGAAGAAGCTTGAGGCTGATCTGGTCCAAATTCAAGGTGAGGTGGATGATGCAGTTCAGGAGGCCAGAAACGCAGAGGAGAAGGCCAAGAAGGCCATCACTGAT
Seq A exon
GTGAGTGTTTACATTCTGTTGCTCTATTCTCTCGTAAACTCTTTTACTGAGCTGCCTGTGGTTACAAAGGAAAGCTTCATGGAAGGTTCTTCTACAAACTCTGATCATTCAAACTTTATTGGCTGATATTTCAG
Seq C2 exon
GCTGCCATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGTGCTCACCTGGAGAGGATGAAGAAGAACCTGGAGGTGACTGTCAAAGACCTGCAGCACCGTCTGGATGAGGCAGAGAATCTGGCCATGAAGGGTGGAAAGAAACAGCTCCAGAAACTGGAGTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102414:ENSDART00000098072:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=NA C2=0.842
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF104734=CENP-F_leu_zip=PD(25.9=88.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAAGAAGAAGCTTGAGGC
R:
CCACCCTTCATGGCCAGATTC
Band lengths:
250-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]