MmuINT0103203 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67034802-67035185:+
Coord C1 exon
chr11:67034802-67034927
Coord A exon
chr11:67034928-67035014
Coord C2 exon
chr11:67035015-67035185
Length
87 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
TCTATTTTGTCACTCACCAGGCC
3' ss Score
7.52
Exon sequences
Seq C1 exon
AACACCAGCCTCATCAACACCAAGAAGAAGCTGGAGACAGACATTTCCCAAATCCAGGGAGAGATGGAGGACATCGTCCAGGAAGCCCGCAATGCAGAAGAGAAGGCCAAGAAAGCCATCACTGAT
Seq A exon
GTAAGCAGAGAGTGAGATGGAGATAGCAAGCCTGAATCCTGCAGGGCCTTTTCAGCCCCTAACCAACTCTATTTTGTCACTCACCAG
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGATACCAGCGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.684
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.1=100),PF057016=WEMBL=FE(11.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(12.4=100),PF057016=WEMBL=FE(15.6=100),PF0026115=Tropomyosin=PU(61.8=73.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCAGCCTCATCAACACC
R:
CGCTGGTATCCTGCTCCTTCT
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: