HsaINT0107448 @ hg19
Intron Retention
Gene
ENSG00000109061 | MYH1
Description
myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:7567]
Coordinates
chr17:10398248-10398634:-
Coord C1 exon
chr17:10398509-10398634
Coord A exon
chr17:10398419-10398508
Coord C2 exon
chr17:10398248-10398418
Length
90 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TCTGTTTTACTGCTAATTAGGCT
3' ss Score
5.68
Exon sequences
Seq C1 exon
AACACCAGCCTGATCAACACCAAGAAGAAGCTGGAGACAGACATTTCCCAAATCCAGGGAGAGATGGAAGACATCATCCAGGAAGCCCGCAATGCAGAAGAGAAGGCCAAGAAGGCCATCACTGAT
Seq A exon
GTGAGTGAAGGGTAACACAGTGGTGGTCAAACTTAAATCTTAATGTGCTGTCTTAGCTGTCTTAACCCATTCTGTTTTACTGCTAATTAG
Seq C2 exon
GCTGCCATGATGGCTGAGGAGCTGAAGAAGGAACAGGACACCAGCGCCCATCTGGAGCGGATGAAGAAGAACCTGGAACAGACGGTGAAGGACCTGCAGCATCGTCTGGATGAGGCTGAGCAGCTGGCCCTGAAGGGTGGGAAGAAGCAGATCCAGAAACTGGAGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-MYH1:NM_005963:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=NA C2=0.684
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCAGCCTGATCAACACC
R:
GCTGGTGTCCTGTTCCTTCTT
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)