DreINT0177143 @ danRer10
Intron Retention
Gene
ENSDARG00000006978 | zak
Description
sterile alpha motif and leucine zipper containing kinase AZK [Source:ZFIN;Acc:ZDB-GENE-070912-386]
Coordinates
chr9:2905243-2909871:-
Coord C1 exon
chr9:2909736-2909871
Coord A exon
chr9:2905288-2909735
Coord C2 exon
chr9:2905243-2905287
Length
4448 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TTCATTTTTCTGTCTGACAGCTT
3' ss Score
9.96
Exon sequences
Seq C1 exon
GTGTGAGATCGAGGCGACTCTGGAGCGTCTGAAGCGTTTGGAAAGAGATCTGAGCACCAAAGAACAAGCGCTGAAGGAGCGAGAGAGACGCTTGAAGATGTGGGAGAGGAAACTGATCGAGCAGTCAAACACACCG
Seq A exon
GTGAGTCATTATGTCATTCTGGCCACTAAAGGGCGTGTATTCACAACAAATAAAAGTGTATTTTAATGACAGTAGAACTGCACGATTCTGGCTAAAAGGAGAATCGTGATTTATTTTTATTTTTTGCCTAAAGTAGAGATCACGATTCTGTAGATGTCAAATAAAGGTTAGTATGAGTGGGCTATTATTATTGTTATTCTCAAACAACAGCAATAGGCTTTGTGTAGCTGTACTGTCTGTTAAAATGCTCAATTTTGTAAAGACTTGGAGTGGTGGACTTGAACAGACTTTAGATTTGTCCTGGTCATTAATGCTGATGATAAGTCTGATGTTGAATTATTGTGTTTGAGATATGCTTACAATCTGTAATGTTCTGTATAAAATCTGTCACTGACGTGATTTTCGTGAATACAGAAGACTGGGTGGGTATTTTTGCATTTCGGCGGGTTTTGGATACTTTTTGGGCTGGAATCAGTCAGCTACATCTGGCAACACTGTGTGCGCTTTCGGTTTTATTTTCACTGCTAAGAGCGGTTCACTTCCCGCACGGCTCCCAAACAATCGCTCTGTGCCACAAACTGAATGTTATTTACAACTTTATTACCTGTTATTCACAGCCAATGCAGGGTCTGTTCACTTAAGTAGACTTCATTCAGAGGCGCGCACCCACCCTGTCGTAACAGCTGACGGGTCAGCTCACGTCACGTTTGATTTTGCGGTCGCAAATAGATCATTACATGAAGACAGAAATGACATTTTTGGGGTGAATTATATCTTATAAATACAGTATGTGACTCTTTCAACATCATTTGGAGGTGTCCGGGTTGCTGAACAACGGATGTAGAACAATGTGAAGACCTGTATAGCCACTTTTGCTTCTCTCCTGAACTTGAAAATATAATTGACAGAATCGTAGAAATGCTGGATTAACATGGTATAGGGGGTCGAATCGAGATCGCGATCTTTTTACGATTAATTGTGCAGCTCTAAATGACAGTGTAACCAAGTGTGGAATCATGGGAGTTGTGGTTGAAATCATGTTGATGATGAGCTAAAGTATTCAACATTCATTATCAACTTCATTATTTAGTATAGGACTATAAAAAGGTGCCACTTACAGATTATTTAAATAACAGTCCTTTTGATATTCACAGACTTGTATTATATCTACATTTGATTTATTTGCCCTTGATCTTTGTTACATCTTTGTTACAACCTTAATTAAGCCATCAAAGCTAATATTTACTCAGAAGGGGATTTTCAGTCATTGTTCACTCTCATGTCTGGCAGATCATTTCATTTTTTAGTAGACTTTAAAAGCTGTATTAGTATGTTTATATGTACACTACACTGCTCAAAAATAAAGGAAACAATAAAATAACACATCTTAGTTTTGAATGAATGAAATATTCGTATTAAATACTTTGTTCTTTACATAGTTGAATCTGCTGACAACAAAACCACACAAAAATATAAATGGAAATCAAATGTATTAACCTACCCAAGCTCATTCTGGAAACGTAGCCCCGCGGACGTTTCTGGAGACCGCGATTTACGTGGCCGGAGATACGTATGGCCGCAATTCGTTTTTTCAAGCAATCGCTACGGGGCGGTGTGACGGCGCTCCTCTTTTTCGCGCTCACCGGCTGACGGCTCACCTCTGTGTGGAGGGCTTTCCCACCGCAACCAGTTTGTCCGCTTAGCTCGTAGTGTTAGATAGGCAGAGCGTAGGCCCGGAGGAGGAGGAGCCAGCCGACGACCAGGTTCGAGTCTGGAGAAGAGCATCACGTAATATGAAAAACAGAATCCTAAATAATAAAGCGAACGTGGTTCTGACGGAGAGAGAATGCGGTGAAATTCGAAAACTCTGTCAAAATCGGACCAGGGCTTTTGCGACTTTTGTAAATCGTCGCTTGGGTTTGGGGAAAGAGGAGGCTGAATCGGCCGATTGGCCGGCCGCCCAGTCGATCGTTCAGTCATTCAGTCAGTCAGTCAGTTATTCGGACAGACAGTTGCTCGACAGTGGCCTTCGGCGGCTTTTCACGCAAGAACAGCGCGAACAGCATGTGCTCCCGAGAGGCGTTCGAGATGCAAAAAAACGCGCTCAGCGGCCTCTCGCGGATTCGCCAAAACAAAAACTGCACAAATACATACCTCCTGGGTCTCCAGAAACGTCCGCGGGGCTACATTTCCACAATGAGCCTGGGTTGGTATTTACCCTAGGAGGTCTGGATGTGGAGTCTCAAAATTGAAGCAGAAAAACACTCTACGGGTTGTTCCAACTTTGATGCAATGTCTTTAAAACAAGTCAAAATGAGGCTCATTGGTGAGGCCTGTATAACCTCTCCACAACACTTGGGCATGCTCCTGATGAGGTGGCGAATGGTCTCCTGTGGGATCTCCTCCCAGACCTGGACTAAAGCATCCGCCAACTCCTGGACAGTCTTGTGTTGCAACACGGTGTTCCAGTGTGCTAATTGGATTCAGGTTTGGGGATCAGTCCATAGCATCAATACCTTCTTCTTGCAGGAACTGCTGACACACTTTAACCACATAAGGTCTTGCATTGTCTTGCATTAGGAGAACCCAGGGCCAACCGCACCGACATGTGGCCTCTCAAGGGGTCTGAGGATTTTTTCCCAATACTCTACTTTTATTCAGCTTTGCTTAGAGATCTGATCAGAAAGAGCTTCTTAATGTAACCGCACGCATTTCCTCAAAGTGTGTATGTGAAGTGCTTGTGAATGTATTGTCCGTCAGCAGCGGTGATTATGTGCTGGAGAAAAGCTGCAGTGTTTGTCAGGAGAGTTTGAAGTGTGTGTCAGGGGTGTAGAGCGCTCTCTCTCTCCTGTATTAGGTGAGGCCGTCTGACGCCCACCGGCTCCTTATGGATGTTATTTATGGGAAATGAAGTGGATGTATAGCCACACGCTGAGGAGAGCCTGAGAGAACAGCGTGAGGACAGAGCGCACTTACACACCGCTGACATTTCACTGACAGTAAGATTGGCCAATTTCAGCAGACCATCAGGAGAGAGAGAAAGAGAGAGAGAGAGAGAAAAAGATTTTTTTTTTATTTTTAAAATTCATCTTTATACCATATTAAAATACCACAATTAATAGATGTGCATTTTACTCCAGCCATTTTATAAATATTAGCTCTCCATCTTTAACAGAGCACAACATGTCTTTATGAATTCACACATTTTCAGATTCTTCAAGATTCTTGACATTCTCATAAAAAAAAAAAAACACAACAGTCGCTGGCCACTTTATTAGGTTACGCCTTACTAGTACCAGGTTCGACCCCATTTTGCCATCAGTACGGACTTAATCCTTCGTGGCTGAGATTCAGCAAGGTACTGGAAATATTCCTCAGAGATTTTACTCCATATTGACATGATAGCATCACGCAGTTGCTGCAGATTTGTCGGTTGCACATCCATGATGAGAATCTCCTGTTCCACCACATCCCAAAGGTGCTCTATTGGATTGAGCTCTGGTGACTGTGGAGGCCATTTGAGTATGGTGAACTCATTGTCATGTTTAAGAAACCAGTATGAGATGATTCACGCTTTATGACATGCTGCATTATCCTGCTGGAAGTAGCCATCAGAAGATAAAGACACTGTGGTCATAAAGGGATGGGCATGGTCAGCAACAATACTCAGGTAGGATGTGGTGTTGACACAATGCTCAATTGGTGCTCAAAGTGTGCCAAGAAAATCTCCCCCACACCATTACACTACCACCAGCAGCCTGAACCGATGATACAAGGCAGGATGGATCCATGCTTTCATTTTGATGATGCCAAATTCTGACCATCTACTATCTGAATGTTGCAGCAGAAATGGAGACTCATCAGAGCAGGCAACGTTTCTCCAAACTGCTATTGGCTAGTTTTGGTGAGTCTGTGTGAATTGTAGCCTCAGGTTCCTGTTCTTAGCTGACAGGAGCGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGCCTCAAGGTTGGACGTGTTGTGTGTTCAGAGATGCTCTTCTGCAGACCTCGGTTGTAACGAGTGCTTATTTGAGTTACTGTTGCCTTTCTATCAGCTAGAACCGGTCTGGCCATTCTCCTCTGACTTCTGTATTTACCCCAATAAACTGTATTTTGATTTAGTGTGTGTATTTAATAATTCTTGTAAATACACTGTAAAACATTCTGCTGCCTTCCATTTTTTAGATGAACTTAACTTTTCTAGTCATCTCAACTTAAACCAGTCATACTGACTACAAATATTAAGTTAAACTTTATATAACTGAACAACGTTGTCGTGATTTTTTTTGTCATATTATAAGTGTAATCTGCGCTTCATATTATTATAAACACTTGCTCTATATTGATGAGATGTGATTATATGAGTGAAGGTGATGACAGATTTAGTATTTCTGTTCATTTTTCTGTCTGACAG
Seq C2 exon
CTTCTTCCAAACCTGGCCATTCACTCCTGGACAGAAGAGCATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006978:ENSDART00000102823:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764712=SAM_2=PU(11.4=53.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]