RnoINT0089001 @ rn6
Intron Retention
Gene
ENSRNOG00000001515 | Map3k20
Description
mitogen-activated protein kinase kinase kinase 20 [Source:RGD Symbol;Acc:1561394]
Coordinates
chr3:59063118-59067369:+
Coord C1 exon
chr3:59063118-59063253
Coord A exon
chr3:59063254-59066796
Coord C2 exon
chr3:59066797-59067369
Length
3543 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CCTTTCTTCCCCTTTGATAGCTT
3' ss Score
7.99
Exon sequences
Seq C1 exon
GTGTGAAATTGAGGCTACCCTTGAGCGGCTGAAGAAGCTAGAGCGCGATCTCAGCTTTAAAGAGCAGGAGCTCAAAGAAAGGGAGAGACGCTTGAAGATGTGGGAGCAGAAACTGACCGAGCAGTCCAACACCCCG
Seq A exon
GTGAGTCCCCCGCCTCGTGGCTTCCTAAAGCACTCCTCAGCCTTTAGGATGCTTCAGCAAGCATGCTGAGCATGACTGCATGGCCAGACTTCTCCCTGCCCCAACCTCCCCACCCTGCTCCTGAGAACCAAAGGCCTTCCTTGATAGTTAGAAATGTGAAACTCTAAAACGCCAGAGATTTAAAAGAAAATTTTCTCCTTCTGGATCTTTTCCTTCAGAACTGAATTTCCTTAAGAATTGCATTTGTATGTTAGAATTACGAGAGCAAAGTCAAATCTATTTCATCGTTGGGCCCTCAGAACACTGAAGGAAGGCTGTCCTTCAGCTTCGCCATCAGGAATGAATAATTCCAAGGCAGCCAGGAATGCCGTGGGTGTGTAAGAACTTAAGCACATTTTCTCTCTAAGGTTGAGCTGGTCTGCTGACCTAGAGGCGACAAGCATTAATATTTCTTATGGTTTAGAGCCACGAGTGTGCTCAGCACCAAATGGGGAGAAGGCTTCTCCTAGGGCAGGCAACCCACTTGCTCTACCTCTGGGAAGACCCTGGTTCTTTCCCAAGTCCAGAGGAGCGCTGACCACTCATGCTTTAACCTTGAGCCTAAGCTGTGTGTTAAATTGTACATCCTGTTCCATCATCCTTTAGATTTTAAACAAGAGTTACCTTTAGGAATCAAGTGAAATCTTAGGATTGGTTTTTCTAGGATTTTCAGTGGACCGTATCTGTCCACTTAAAATCACACGGAGTGGGAAATTCAAAATAAAGTTATTGTTAATACACCAAGAAAAAAAGTTAAATGCCCCTCATTGTGTCTTCCTCAAAGGCCTATCTAGACAAGTCTTAACCTCCATTGAGCAGCAGTAACAGGTTGCAAAATGTCTTCCAATATCTAAAGAGCAAGAGAGTCCGTCTTTATTTCCAATTCCTATGGAGACGCAATCTGGCACCCTCTCACCCCCCAAAATAGGAGAATGCATTTAAATGTTACACATTTACCCTTTTCAAAAATGACTTTGGTAATCCTGGGAATGCCAAGGTCAGAACTGAATTGCTATACCTAAGTCTGGCATGAGATATTAGAAGGGTACCTCACGTTTGTTAGCAAGTCCTGGGAACTTAACCAGACTCCGATAGGAAGGGTAAAGGGTGCTGTTTCCGGTTTAGGCTGAGTTGGTGCCAGCTGGGTGTAGGACTCAGAGCTCTGTGACAGAGCCCAGCTTCTTGAAGGCAGGGGAAGCAGGAGAGCACAGCCTTGTCCCTACATCCCATCTGCCGAAGGCTAGGAAGCTGTTTCCTTTCCGCTTTTTAAGCTCATTGAAACCTTAACTGTCAAGCCCTGCATGGCTCTACCCTTTCTAAATGTCTTATTGTCAAGAAAACTTTCAGCCGCTTACTAGTGTGTGCCTCAGAGCCTCGCCTTGGTTTACCGGCATCAGTCTTGCTAAGAAATGATGGCTGCCTCGCACGTTATTGCTGCTGGTAACATGGTTGTGTGATAAGGTGTAACATGCTACAGGTGCTTGGTAGGTTGCTCACTTGTGTTTTAACCCCAGAAAGCTCGTTTAAAGAAAGTGCTTTGCAGACCACCATCAAACAGCGGACAGCATGGTGCAGTCCCTGTGAGGTCCCCTCGCTTTTTACTTACGGGGCCTAAGGTTTCTTGTATATAACACTTGCTTTTAATGTCTCCTCTGCCTTGAGCTGGTGTTTCTAAGGGAGAGGAGTTTGTGCTCAGGTATTTTATAAGTAGCTGTTTTCTTTCATCCTCACTTCACCCTCTAGTCAGTTTTTAACTAGACTGCTGAGAAAAAGAAATCTTTTTACAAGGGCAAAAATGAGGCTTTTTTCTTCTTATAAGTAGCTTCATCTTAAATATGATAGTCTAACATTTACACAAGTGTATAAAAATACTGTCAAATTGATTTCAGGGGTACTAGTTTCCTTCCTAAAACTGAAACATTAAAGATCCTTGGAAGGATGAGTTCTCTGTGTGTAAATAGGGATGAAGCTTATTTTTAATTATTGCTGCAGCTTGATATAAAAACATTTTTAGAGATAAACTATTTAACAAATATTTAAGGAGCTCTTTAGACTCTATCATACTGTGAGAAGAGACCACTGCAGTAATAAATAAGTAAGCTGCAAAGGGTTTCTGTCAATTGAAAACCCGATTTTGGAATGTGAGAAGGGAGGGAATGAGGCCTTAGGGAGTGAGGCCCTGCTCCAGCAGTAAGGGCCGGAGGCTGGCCGGATGGACCGCACGCAGGACCTTGGTACTGAGCCCAAACTGCCCAAATTCTCCTCTAATAGAATGGGCTGGCTTTTGAAAACGTATCTCCAACAGTTACTTACACTGGAAAACTGGGCTTTCAAGATGGCTCTGTCACTAAAAGCACTTGCCAACCAAGCCTGAGAAGCCGAGCCCTGAGAACCTAAAGGGGTAGAGAACGGACTCCCAAAAGTTGTCTCTGACCTCTACACATGCGCCTGCGGCATGCATGTGCCTGCGACAATGATACAATGGTTTTTAATCTTAAAATAAGAGAAGTAACTATTCTGTACCCTCACACCCAGAATGCAAAGTTCATCCAAGAGTTCCCGTATTTGTGCATTATTGGTGAAAAGCAAGGACCTTTCTTTGCTTTGTCCTCAGACAACATAGAACCATTGTTTTTACACCCTGACAGTTTTGCCACGAAAGAAATAGGAGCAAAGGCTTTGGCTTAGGTAGGCTGTCGAAGGGAACTGATAGGGAAGAAAGTAAATTACCACCACTGTGACTATGAGAAAGGCCTCATAGACAAGTCCTACTGGAAGGAGACTTGGGTATCGGTGGCTACAGCAAGGAGACAGGCTAAGTGAATCCTCAACAGGTCCTCCCAGTTTCCACAGGTTCGCTATAGCCGACTTAAAGACAGGATCTCGAATTTCCTCCCAAGCCAATTATATAATAACATGAAGAAATTAAGCCCAAGTCAGTAAAAAACGGAAGTAAGGTCACCTTCAGAGTGCGCTCAAAGCACGGTCCCAGGGAAAGAGGTCGAATCAACCACATCCCCACGTCACCCACGCACGCACGCACGCACGCATGCACGCACTGCAGCCAAAGTGCTTTTATCCTTCCTCTGCGCTCTTCCTTGGATCTGGCTTTCTGATTTTTTTTTTTTTACTTGAGATTTAATCTCTGCCTCATTTCTTCTTTTTTTAATATATGGTTAATCAAATGTTTCTGTGTGGAAATGAAATTGGGGAAAATTAAGAGACATCCTGAAAACTATTTTATTTTAAGCAAAGCAGGGGCTTATCACTGGTACCTCCCTGTCTGTTTGCAATCCGGCTCAGTATGGTGCTTTGCGAGCTTTCTGTTACGATTCACCCTGCCACTCATAAAATTACGGCCAATACGCTGGTGTCAGGTCCGCCATTCAAAAGTCCTCATCGTCCACCTGCTGCGGGGTACCATCTAATTGTGTGGTATCTGTCCCTGACTTAAATTGGTACTAATTTCTCTTTTCACTTCTGTCCTTTCTTCCCCTTTGATAG
Seq C2 exon
CTTCTCTTGCCTCTCTCTGCAAGAATGTCTGAGGAGTCTTACTTTGAATCTAAAACAGAGGAATCAAACAGTGCAGAGATGTCTTGCCAGATCACTGCAGCGAGTAACGGGGAGGGCCATGGCATGAACCCAAGTCTGCAGGCCATGATGCTCATGGGCTTTGGGGATGTCTTCTCAATGAACAAAGCAGGAGCTGTGCTGCATTCTGGGATGCAGATAAACATGCAAGCCAAGCAGAATTCATCCAAAACCACATGTAAGAGGAGAGGGAAGAAAGTCAACATGGCCTTGGGGTTCAGTGACTTTGACTTGTCAGAAGGTGACGATGATGACGATGATGGTGAGGAGGAGAAGGACGTGGATAATAGTGATTGACGGCAGAAAGGAATAAGATCGAAAATGTTTTGTTTTGTTTTGTTTAGAAAAACAGAAAAAATGTATTATCTCAGTCTGTGCAAAAAGCAGCATAGGGAGGCAGAGCCCCCAGCACGGCGCCTTAGGCCGAGTTCATTTAGGGTGGTTTCCTCATCAGCGTGACTTTGCTTCTGCGTTCAGCAAAGGGCGGGGAATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001515:ENSRNOT00000002068:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]