DreINT0178310 @ danRer10
Intron Retention
Gene
ENSDARG00000075470 | zgc:110238
Description
zgc:110238 [Source:ZFIN;Acc:ZDB-GENE-050522-337]
Coordinates
chr4:72010184-72016928:+
Coord C1 exon
chr4:72010184-72010313
Coord A exon
chr4:72010314-72015702
Coord C2 exon
chr4:72015703-72016928
Length
5389 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
TACTTTTTTTTTCTCTTTAGAGC
3' ss Score
10.17
Exon sequences
Seq C1 exon
AGGAAAACTTCTGCTGAAGCGACTGATCTCCACACTGTTATAAAGATGGCGTTTATTAAAGAGGAGAGTGAAGACCTGAAGATTGAAGACACATTCACAGTCAAACATGAAGATCTAGAGGAGCAAACAG
Seq A exon
GTTGGGTTTCTTTCTCAAATCTATTTTCTTTGACATTTCTTGCATGTGCAACTTCTGTCATAGAGAAATAGATTCAAAAGCAGTATAACAACGGTGGAGTTCACTGTAAATACAATGTTACGATCACAAAGAAGAAACAGTTTGCACAAACTCAGAAGCGTTTCGAGTCCTGAAACTTGCAGGATGTTTTATATCAGGATGTGGGAAAATTACATTTCTAATTTCCTGAATATTTTAATAAAAACTCCTTGCAGAAAGTGCCATTATGGCCATATTCAGGCAATTGACCCTTCGCTCAGCCCCGCCCTCCTTAGTTACTGTTGCTACGCCTGTCAAGCTTTCGTGCCTGGCTCGTCTATTACAATGTGTAAGCCCCAGTGTCAGACGTTGCCAAGGATATAATTTTTGGCAAACAGGTGAGATATCCGAGAAAGCCAGCCAAAAAAGGACTGCAGTATGCGTTACAGGGGTATATTCAGGACATAATAGGCAACCGATTAGAGAATAAAAATCAAAATTGAAGCTTGGTTAGCCTAGCTGCCTCATATGCTGAACATTCACCAGCTTAGTTCATGCACAGCAAAAGAGGTGACATTTAAAAATAATCTAATAATAACAAATTAAACCGTGATTTCTCTATTTTTAACCAAAAAGCCTGAAAGACTATTGTTTTGCAATGAAATATAGCGTTACTAACCGACGAGGAACTACGCATGGACAGTTCTTCTACATAATTCATTTATAGAAAGAGCAGCCAGAAAGAGGAAACTGATGGATTTGTGCTGAATATTAGCATCATTGACTATAACAATGTACAGCACCTATATCTGTCAGTATGTTTGTGTGCTCTTCATCCAGTTTCTATTCTAATTTGCAGTTCAGTGGAAGAAATAAATACATTAAAATGCAAATCAAAGTATAAATAGCAGAAGTGAACAAATAGATTTTCCCTACCAGCAAATATTAATCAGACAACAAATAAAAGAGCAGACACTAACCCGCTATAACGTCGTCACTAATGACTAAATCTTTAAAAGACAGACGAAAACATTGGTAAGTTGTAGTTCTGACATGGACATGAGGGTTATAAATGACTGAAAAACAGCTGCGGGTGAAGTGTATTGATCGTAAGTGCTCCGATTGTGATCTCGGTTTTGTTCTGTTGATATGTATTTTCAAATATTTGTAGTTTTAAACAGATGGAAATATGATCGCTATTAGCATGACTACTATAGCGAGGGCTTAAACGGAGCAGTGCTCATAATATCGAGCGGAAAAAAAGAAAAAGACAGCTGGGAAACAGAACCTGCTTTGTATTTTTGTAGGAAACACAGTTTAGATCTGTTTAAGGTAAGAGGTGTGTGAGTTATTGCAGTTTATGACTGTGTCAGGAATATCGAAAACAAAACCAGCTTGTCTCAGCTCCTTTAGCGCACCTCACAGAGCTTGATCCACGCTGGCATTTCTCCTCTTGGGTTTTTGGTTTAGAAAAGGGAAAAAATTCCACCACCCCGTCCAAACTTTTAAGATACCGGGTATCAAATTTGCACAATTCATATGCACAACACTTTGGCTTGTTTCCCTCGCTCGAAAGCTTGACAGAGCTCCTGCGTGCAGCTACGCTTGCTAAGCCACGATTGGTGGGTGGCGATTTACGGGTGTGACTAAGCGAAGGGTCAGTTACATGATTTTCACAGTGGATGATCCTAGTGTGCCATCAGTCATACGTTTACATTTAGTCATACAGCAGATGCTTTTGTCCATTTAGCGATTCAACGAAGAGGCAATGCACACAAGAAGTTAGAGCTGCATGATTCTGGCTGAAATGAGAATCGCGATTATAAATAAAGATCACGATTTTCTCACGATTCTGTAAATGTAAAATAAATCTTAACATGAGTCGGCAATTATTTTAGTTTTTTCTCAAACATATGGTAAAACAACAACAATAATAATATGTGTAGGTCTACTGGTTTCTACAAATAGTTCTATTCTATTTATAATAATTCTGATGTTGAATTATGTTTGACATATAGGCCTATGCTTGCAATCTGACATTGACAACATTATAAGACCATTTAATTCACTGGTAAAATCAACATTTTATAGGCTAGAGTAGTTATACGGACACTGTAAACATTTATTTTCATGCACAGCTGTGTGTTCGCAATGAACGAAAAAACATCAAATGCTTGTCGCAATCATAACTCTTAAGCCTGGTTTATACTTCTGCGTCAAGTGACCGGCGTAACTCACGGCGCATGCAACGCGCGTAGCTGTGCATTTATACTTCTGCACGCTGTCTCTGTTGGTCTGCATTAACCCTTCTGAATCGCTAGTTGGCAGTTATTTACAACTTTATTACCTGTTACTCACAGCCTATGCAGGCTCTGTTCACTAAAGTAGACGCGCGCTTGCCCTCTCTGTGATAACAGCTCATGATCAGGAGCTCACGTCATGTGTGATTTCCCGGTTGCGAATACAGCATTAAATGAAGACAAAGATGACATTTTTAGGTGATTTACACCTTTTAGATTCAGTATGTGACTCTTACAACACTATTTGGAGGTGTCCATGTCGCTGAGCAACGTGTGTGAAAAAATGTAAAGATTCATGCAGCCACCTTTGCTTCTCTCCTGAACTTGAAAATATGATTGGCAGAATCGTAGAAATGCTGGATTAGGATCGTCTAGGGGAGGGGTGTCCAACCCTGTTCCTGGAGAGCCACCTTCCTGCAGATTTCAGTTGCTACCCATATCAAACACACCTGAACCAATTAATTAGGACCTGAACACCACGTGATAATTACAGGCATGTGTGTCTGATATGGGTTGCAACTGAAATCTGCAGGAAGGTGGCTCTCCAGGAACAGGGTTGGCCACCCCTGGTCTAGGGGGTCGAATCGAGATCACAATCTTTTTTCGATTAATTTTGCACAAGAAGTGCTAATTATACAAAGTAACTTGATTGTGCTCAGCGAATTTAGTGCTGGAGGGGGAGGGGGGTGGTGGAGAAAAGAAGGGTTTTGGTTTTATTCATCAGGGTTCAGGTGCTCTCTGAAAAGCAGGGGTTCTAGTTGTCGTTGGCAGTGGTGGAAAGAGTACTGAAAAATCATACTTAAGTGAAAGTACCTTTACCTGCCTAAAAATGTAGTGCAAGTAGAGTAAAAGTATCTGTTGTAAATATTTCTCAAAGTATGAGTAAAAAGTAGCCCTTTCAAAAGTACTCAAGAGTAGTGAGTATTACTCTGTTAAAAGCGAAGCATTTAAAATGTCATTTAAAAGCAAAAGCATTTACATGTCATTTGTGTAAACGTAACATTCTGTAGTGCATTTAGTTATTGGCCAGCAGCAATTGACCTGAATCCGCTTCTATTGTTCAGTGAATTTGACGCGCAAATGAAGTGAGTGAACTCAATGTTCACGTGTATATTTACACGCGAATAGCACGACTTATCCGTGGTGTGAACACAGCATTAAGAGTAGCCTGAGCAAAATCCTAAAGATGTCTATAACTTAAATACCTCTGTCGAGGATACTTAGTGCAGTGTTGGACTAAATTGTATAAACGTTTCAGGGGGTTGTGATGCAAAGAGCTGGAGACTAAGCAATGACGTACAGGAATTAGCCTGGCAATGGATTCGCCCTGTGCTGATCCCTTCAACATAACAGTATTCAAATAAATAGATGCTGCGAATCCTATCAGCCTAGCAGTATTGCCCTGAACTTCAAAGTCACAGTCCTTATAATCAGAAAGTGCATGAAGGCAGTAGGTTAATGTCTCAGAGATTTGGCCTGGTAGACTCAAACTTTGTTCGAATGTCATCACCTCTAAACGTCGCCTCGAAACCATTCCATTATATAGAGAATGTGTAGTGCTGGTGTGCCTCCAGGAGTAAGGTTGGGAAATGTTGTTCTAGACATTACCTCCAAGTAAGAAGTTGAAAAAAATATACATCTTTGAGTGGTCTGGAATGTAGATTTAAAGTCGCAATGCTATCGAAATGTCTTCAAATACTTATATGTATATTGTAGTGTTTGTTACAAACAATGTATTTGTGCACTTCATCATTTTCATAATAATAATAATAATTATAATCTTCTATCAAATATTGTAACCTTCTCTCCCCCTCCAAATGACTTCACTTCTGGCCACATGGAATGTCTTTAGGGCTTTGCTCTTGTCTATTCATTCATCTTAATTTTGTTAGAATTACCCATCTACCAACTATCCAATCAGTTCCCAAAGCCCTTTTTTCATTGTAGGTCCATATAAATCAGATGTTAAGTTAAATTAAGTCGTTATATGGGGATAAAGGGACAATCTTCTGTTTCATGGTGACTTTAAGCCATGAATGAAACATGTTTGAGAATTGATCTTTAACAAGCCAGCTATCCTGTGTCAAGGGGTTTTGGTAACTATCAGCCTTTGTGTGTCCTAAAAAAGCAATGAGTTAAAAATGTTAAAACATTCTAAGATTACATCTAATGCCTCTTTGTACCTGTAAGACCTTGCATGTGTAACCCTGCCGGTCCTACGCCACCAGACGCGCTCCGAGCTGGCGACCTTCCGCATGGGAGTCGGTTGCTCTACCAAGGAGGCTAAAGACCATGGCCTCTAGCGTCTGTCGCTAGAGCACCTTTAGAGGTCAGAGGAGTGAGGTTTACCTGCACAGCACTCACTAGCTGGCCTCCGCTACACTCACCCCCCTAAACCTCACTCCCATCCGGGTCACGGCACCAATGTAACCCTGCCGGTCCTACACCACCCAACTTGCTCCGAGCTGGCATCGAACCGGCGACCTTCCGCATGGGAGTCGGGTGCTCTACCAAGGAGGCTAAAGACCATGGCCTCTAGCATTTGTCGCTAGAGCACCTTGTCAGAGGAGTGAGGTTTACCTGCACAGCACTCACTAGCTGGCCTCCGTTACACTCCCCCCTCTAAACCTCACTCCCATCCGGATCACGGCACCAATGTAACCCTGCCGGTCCTACGTCACCCAACCCGCTCCGAGCTGACATCGAACCGGAGACCTTCCGCATGGGAGTCACTCAGCACTCACTAGCTGGCCTCCGTTACACATGCAGTTGTTGGTTTTGATAGTCAATTTCTTTTAATCATATTCCATGTTACTTTGTACCTTTTAAATCGGGGTGCTTGAGTTCACCTGCTTATTCAGTCTTGATAGACGATGGTAAACAAACTTTGGGGGCTTGAGGGTTCAACTTGAGCTGAAAGTTCAAATCTCCCTATGAGTGCTTCCGGCGAGACAGATTGAGCAAATAGGAGGACAAGGGACGGATGACAAGGATTGTGAACTTATATACACACATGAGAATAATAACCTACTTTGTGAACAATATTTACCATACTTTTTTTTTCTCTTTAG
Seq C2 exon
AGCTGATGGTGCTCAAAGAAGAGTTTCAAGATCTTAATGAAATGGAAGAGAGTCACCAAGATTTAACAACTGATGAAAAATCCAAGTCAAAGAAGAGTTTACCGCATAAAAGAGTTCAGAAAAACAATTTTACCTGCTGTGTTTGCGGAAAGTGTTTTTCCCAAAGACACAACCTTAAAGTCCATATGAGAATTCACACCGGAGACAAGCTTTTCACGTGTGATCAGTGTGGCAAGAGTTTCACTCAAAAGTCAAAAATCGACGTCCACATGAGAGTTCACACCAGTGAGAGACCTTACTCGTGTCCTCAGTGTGCAAAGGGTTTCCGTCAAAAACAGCACCTTAAACTCCACATGAGGATTCACAGCGGAGAGAAGCCATTTCCCTGCAATCAGTGTGGGAAGAGATTCAGTCAACTACAAGCACTTCAAAGCCACTTTACAATTCACTCCGGAGAGAGACCTTATGCCTGCACTCAGTGTGAGAAGAGTTTCCGTCAAAGACCGTCCCTTGAAAAACACCTAAAGGTTCACTCCAGAGAGAAGCCATTCACCTGCTCTCATTGTGGAAATGGTTTTACCCAAAAGGAGCGTCTTCAGAACCACATGAGGATTCACACCGGAGAGAAGCCTTTCGCTTGCCCTCACTGCGAAAAGACTTTTGCTCATAGAAGCAACCTTTACTTCCACGTGAGGACTCACACCGGAGAGAAGCCTTTTGTCTGCACACACTGCGGCAAATCCTTTCGATGTAAAAACTCTCTTGTTGGCCACATGAGGACTCACACCGGAGAGAAGCCGTTTGCGTGTGATCAGTGTGGAAAGAGTTTCTCGAGAGAGTTCAACCTTAAGTGTCACATGAGCAATCACACTGGAGAGAAACCATATACTTGTGGTCAATGTGGAAAGAGTTTCGTGCGTAAAGACTCTCTTAATAGGCACGAATTGATCCACTCTAAAGGTATTAAATGTCATCATTGTGGAAAGAGTTTCAATCATAAGACCAGCTTCAAATCTCACATGAGGCTCCACTCTGGAGAACAAGGCTGAGGGTCCAAAATCTTTGCTGAAGTACTTCTATAAATAATCAATTGAGTAAAACCATTCTAGCGACAGCTACCTTTCATGTAATGATTTTACTAGGTATACATACTTAATTCCATGGTCTGTTAAAATTCTTGATTCTGATTTGCTTGAAGGTGTACAATAAAATCATGTAAAAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075470:ENSDART00000150532:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF0115514=HypA=WD(100=21.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF064679=zf-FCS=WD(100=9.4),PF0009621=zf-C2H2=WD(100=6.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]