MmuINT0179756 @ mm9
Intron Retention
Gene
ENSMUSG00000034429 | Zfp707
Description
zinc finger protein 707 [Source:MGI Symbol;Acc:MGI:1916270]
Coordinates
chr15:75803972-75806295:+
Coord C1 exon
chr15:75803972-75804085
Coord A exon
chr15:75804086-75804899
Coord C2 exon
chr15:75804900-75806295
Length
814 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ATGTATCTATTCCTCCACAGGAA
3' ss Score
10.63
Exon sequences
Seq C1 exon
GATGCTGTAGCCGGAGACCGGGCCTTATTACCCGTCTGGAACAATGGGATGAGCCATGGGTTGATGACTGGGACAGATCTGAGTTTCCAGATGGACAAAAAAGTTTCTGCCCAG
Seq A exon
GTAAGCGAGATGAGCTCTTCCCACTCTCAGACAGTGCGAGAGTGGGTGCTCCACTTCTGCCACTAACTAAGCTCTGACCGTGTGTGTGGGGGGTGTCTGTGTCACTGGTCCCTTGTGAGGCTGTACCTGAAGAGAGGTGTTTGAGAAAGGGAGGCAGTGTCCTAGCACTGTCTGAGCCTAGGGGTGGCTGGGATTCGACTGTTATATCCGTCAGCAAGGCGGAGAGAAGAGAGGCCATGCTCGGGGTGTGTGATGGGGAGCAGGGTCTCCATCTCACATGCGTTTGCTCGTTTGTAGAATTAGGATAAAACCCCGGCTCTTTCCTTAAGATATTTATTCCCAGTGGTGGTCATGAGGGGGTTTTCCCTTTGCTACGGTGGGCATGGAACCCAAGGCCTCAGGTAAGCAGTTGGGCTACAACTTGGCTCGGGATCCTGTCCCCCTCCATGTCCTGCCTGCACACCTCCAGACAAGGTTTCTCTGTGTAGCCCTGACTATCCTGGAACTCACTCTGTAGACCGGGCTGACCTTGAACTCAAGAGATTCACCTGCCTCTGCTTCCCTACTGCTGGGATTAAGGGCGTGCGCCACCACCCAGCTTGAGGCTCACTGTTAAGTCTCCCATTGTTAGCTTGGCTCATCTGTGCACACTGAACAGATTTTCACACCGCTTTTCGTTGACTGCCTAAGTAGATTGGCTTGATTTCACTCTTGGTAGCTTTTGGTAGCTTTTCTTCACCCTGTGTTGGGTGGTGGTTTTTAAGTTGATTTGTATCTGGGCCAGTTCTGTGTGAATGTATCTATTCCTCCACAG
Seq C2 exon
GAAGCAGAAAGGTGGCCCATTCACGGATAGGAGCCGGGAGAGGGGCTGCCTTGAGGAAGAGTGCCCTGACTTCCGGTAAGGTGCGCCTTCCCAGAGCTACCTCTGGGAGGAGAATGGACAAAAGGGAAGCTTTCCAGAACCGGATATGTGGAAAATCCCACAGGAAGCAGCCAGACCTCAAGGAGCAGGGCCAGAGCGGCCCGGAGGGACAGCCATTTATCTGTGGCATCTGTGGGAAGGCCCTGAGCTGCCACAGCCGGCTGGCCGCTCACCAGACAGTCCACACGGGAACCAGGTCCTTTGAGTGCCTCGAGTGTGGCCGGACGTTCCGCTGGGCTTCAAACCTTCTGCGCCACCAGAGGAATCACACAAGCGAAAAGCCCTTCTGCTGTGAGCTCTGCGGGCAGGCCTTCAGCTTGAAGGACCGCCTGGCGCAGCATCGCAAAATCCACACTGAACACCGGCCCTACGAGTGCGGCGACTGCGGGAAGGCCTTCAAGCAGAAGTCGAACCTCCTGCGGCACAAGCTCGTGCACACCGGGGAGAAGCCCTTCTACTGCGACACCTGCGGCAAGGCCTTTCGGACTAAGGAGAACCTCAGCCACCACCAGCGGATTCACAGCGGAGAGAAGCCCTACACCTGCGGGGAGTGCGGCAAGGCCTTCAGGTGGCCCAAGGGCTTCAGCATCCACCAGAGGCTGCACTTGACCAAGAAGTTCTATCAGTGTGAGCAGTGCGGAAAGGGCTTCCGCCACCTGGGCTTCTTCACGCGACATCAGAGAACTCACGGGCGAGGAGAAGTGTAGCAGGTCCTGCGGGCATCTGGGCCTTCCCTGTTCTCGGCTGCGGGCAAGACTGCAGCAGGTCCCCTCCAGCCGAGGCCACACACACAGCCCGTGAACTGGCAGTTCTGACACTGGGAAGGGATCAGCCGTTCCTCTGGTGCTCCTTGCCTCTGGCTGTGTCTGCCAAGGAATTTGCCCCGGCCTGAGTGTCACTTGTACGCACTTTAACTCTTCTCTCTCCTAGCTCTTCCATCCTGTCCTCCTGTCCTGTCCTGTGGGAGGGAGGTTTGAGGCTCGTGCAGAAGCAAAGCTTTACTGTTGGAGCTGACAGAATGGCCCAGAGGGCAAAGGTCTGCAAAGCCCGATAATTGAGTTGGATTCCCAGGAATCCGTATGGTGGGAAGGGAGAACCAAATGCTCTAAGCTGTCCTCTGACTTCCCTCGTGTGTGTGTGTGCGTGCACACACAAGACATAATAAATACATAACTCAATGGGAGAAGCCTGTTCTTCAGCCTCGGCAGGTGGCTATAGAAACAGCTTTGGTAGCGGGCTACAGAAAGAGCTGGATGCAGGCTGGGGCGGCTTGTGAGGAGTAAACTACTACAGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034429-Zfp707:NM_001081065:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.168
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF051298=Elf1=WD(100=27.1),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.7),PF054957=zf-CHY=WD(100=25.7),PF134651=zf-H2C2_2=WD(100=9.7),PF134651=zf-H2C2_2=WD(100=9.3),PF0009621=zf-C2H2=WD(100=8.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCATGGGTTGATGACTGG
R:
GTGTGGACTGTCTGGTGAGC
Band lengths:
350-1164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: