MmuINT0179756 @ mm10
Intron Retention
Gene
ENSMUSG00000034429 | Zfp707
Description
zinc finger protein 707 [Source:MGI Symbol;Acc:MGI:1916270]
Coordinates
chr15:75973542-75975746:+
Coord C1 exon
chr15:75973542-75973655
Coord A exon
chr15:75973656-75974469
Coord C2 exon
chr15:75974470-75975746
Length
814 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ATGTATCTATTCCTCCACAGGAA
3' ss Score
10.63
Exon sequences
Seq C1 exon
GATGCTGTAGCCGGAGACCGGGCCTTATTACCCGTCTGGAACAATGGGATGAGCCATGGGTTGATGACTGGGACAGATCTGAGTTTCCAGATGGACAAAAAAGTTTCTGCCCAG
Seq A exon
GTAAGCGAGATGAGCTCTTCCCACTCTCAGACAGTGCGAGAGTGGGTGCTCCACTTCTGCCACTAACTAAGCTCTGACCGTGTGTGTGGGGGGTGTCTGTGTCACTGGTCCCTTGTGAGGCTGTACCTGAAGAGAGGTGTTTGAGAAAGGGAGGCAGTGTCCTAGCACTGTCTGAGCCTAGGGGTGGCTGGGATTCGACTGTTATATCCGTCAGCAAGGCGGAGAGAAGAGAGGCCATGCTCGGGGTGTGTGATGGGGAGCAGGGTCTCCATCTCACATGCGTTTGCTCGTTTGTAGAATTAGGATAAAACCCCGGCTCTTTCCTTAAGATATTTATTCCCAGTGGTGGTCATGAGGGGGTTTTCCCTTTGCTACGGTGGGCATGGAACCCAAGGCCTCAGGTAAGCAGTTGGGCTACAACTTGGCTCGGGATCCTGTCCCCCTCCATGTCCTGCCTGCACACCTCCAGACAAGGTTTCTCTGTGTAGCCCTGACTATCCTGGAACTCACTCTGTAGACCGGGCTGACCTTGAACTCAAGAGATTCACCTGCCTCTGCTTCCCTACTGCTGGGATTAAGGGCGTGCGCCACCACCCAGCTTGAGGCTCACTGTTAAGTCTCCCATTGTTAGCTTGGCTCATCTGTGCACACTGAACAGATTTTCACACCGCTTTTCGTTGACTGCCTAAGTAGATTGGCTTGATTTCACTCTTGGTAGCTTTTGGTAGCTTTTCTTCACCCTGTGTTGGGTGGTGGTTTTTAAGTTGATTTGTATCTGGGCCAGTTCTGTGTGAATGTATCTATTCCTCCACAG
Seq C2 exon
GAAGCAGAAAGGTGGCCCATTCACGGATAGGAGCCGGGAGAGGGGCTGCCTTGAGGAAGAGTGCCCTGACTTCCGGTAAGGTGCGCCTTCCCAGAGCTACCTCTGGGAGGAGAATGGACAAAAGGGAAGCTTTCCAGAACCGGATATGTGGAAAATCCCACAGGAAGCAGCCAGACCTCAAGGAGCAGGGCCAGAGCGGCCCGGAGGGACAGCCATTTATCTGTGGCATCTGTGGGAAGGCCCTGAGCTGCCACAGCCGGCTGGCCGCTCACCAGACAGTCCACACGGGAACCAGGTCCTTTGAGTGCCTCGAGTGTGGCCGGACGTTCCGCTGGGCTTCAAACCTTCTGCGCCACCAGAGGAATCACACAAGCGAAAAGCCCTTCTGCTGTGAGCTCTGCGGGCAGGCCTTCAGCTTGAAGGACCGCCTGGCGCAGCATCGCAAAATCCACACTGAACACCGGCCCTACGAGTGCGGCGACTGCGGGAAGGCCTTCAAGCAGAAGTCGAACCTCCTGCGGCACAAGCTCGTGCACACCGGGGAGAAGCCCTTCTACTGCGACACCTGCGGCAAGGCCTTTCGGACTAAGGAGAACCTCAGCCACCACCAGCGGATTCACAGCGGAGAGAAGCCCTACACCTGCGGGGAGTGCGGCAAGGCCTTCAGGTGGCCCAAGGGCTTCAGCATCCACCAGAGGCTGCACTTGACCAAGAAGTTCTATCAGTGTGAGCAGTGCGGAAAGGGCTTCCGCCACCTGGGCTTCTTCACGCGACATCAGAGAACTCACGGGCGAGGAGAAGTGTAGCAGGTCCTGCGGGCATCTGGGCCTTCCCTGTTCTCGGCTGCGGGCAAGACTGCAGCAGGTCCCCTCCAGCCGAGGCCACACACACAGCCCGTGAACTGGCAGTTCTGACACTGGGAAGGGATCAGCCGTTCCTCTGGTGCTCCTTGCCTCTGGCTGTGTCTGCCAAGGAATTTGCCCCGGCCTGAGTGTCACTTGTACGCACTTTAACTCTTCTCTCTCCTAGCTCTTCCATCCTGTCCTCCTGTCCTGTCCTGTGGGAGGGAGGTTTGAGGCTCGTGCAGAAGCAAAGCTTTACTGTTGGAGCTGACAGAATGGCCCAGAGGGCAAAGGTCTGCAAAGCCCGATAATTGAGTTGGATTCCCAGGAATCCGTATGGTGGGAAGGGAGAACCAAATGCTCTAAGCTGTCCTCTGACTTCCCTCGTGTGTGTGTGTGCGTGCACACACAAGACATAATAAATACATAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034429:ENSMUST00000109967:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.7),PF054957=zf-CHY=WD(100=25.7),PF134651=zf-H2C2_2=WD(100=9.7),PF134651=zf-H2C2_2=WD(100=9.3),PF0009621=zf-C2H2=WD(100=8.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCATGGGTTGATGACTGG
R:
GTGTGGACTGTCTGGTGAGC
Band lengths:
350-1164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types