HsaINT0188197 @ hg19
Intron Retention
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:27815]
Coordinates
chr8:144773770-144777555:+
Coord C1 exon
chr8:144773770-144773883
Coord A exon
chr8:144773884-144775840
Coord C2 exon
chr8:144775841-144777555
Length
1957 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGTGTCTGTTCCTTCCACAGGGG
3' ss Score
10.81
Exon sequences
Seq C1 exon
GATTTTGCAGCCCCAGACCAGACCTCGTCTCTCGCCTGGAACAGTGGGAGGAGCCGTGGGTTGAAGACCGGGAGAGACCTGAGTTCCAGGCAGTGCAGAGGGGACCCCGGCCAG
Seq A exon
GTGAGTGCTGGGCTGTCTGGGCTCGGCGGGCCCCGTCCCTGTGGCCCACAGCTCCTGGGTAGTGCTCAGCACGCTGCAGTGACCAAGGGTGTGTCCTTCCCATGGGAGAGCAGACACACAGCTGCTCTCTAAATTAGACAGGCATTAGAGACGTAGGGGCAGCCACGCTCCTGCCCTGATGGACACTGGCCGGGGGTGGGGCTCGAAAGGCATAGTGCTGCAGGATGACATACAGCTGCAGCTCGGAGGGGCCTGAGGCTGGAGTGACACTTGAAGCCTGCACCTAGCCACCCAGGTGCTGTCCGGCGGAGGCCATTGGTGTGGGTGTCTGACCTCCCTGTGATGGCCATGTGGGGTCCCAGGCCTGGTACTGACTGCACGTGAGGGTCTCCAGGTATGTGGCTCTGGGTAGGAGTTTGCTCCACGTCCTTGTTTGCAAAACTGGGACAGTGGCCATGCTTCCCTCCATTAGGTGAGGGTTGCTCTTGGGGCAGTTGTCAGCAGGGTTTTGCTTTTTACTTACATTTTCAGAGTGGGATGGAGCAGCTATGTGAACACGAGCCCTGGGAGGTCCCCGGGTATGTGGAGTCCCCGACTGTGGAGTGTCAGGTTCCTAGGTGTGTGGAGCCCCCGACTGTGGAGTGTCAGGTCCCTGGGTGTGTGGAGCCCCTGACTCTGGAGTGTCAGGTCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGGATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGGATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGGATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTTGCATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGGATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGGATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGCATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGGATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGCATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGCATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGCATCCCCGGGTGTGTGGAGCCCCCGGCTGGGGAGGTGTCGCATCCCCGGGTGTGTGGAGCCCCCGGCTGAAGGGAGCCATGGCTCTGAGGCTGAGTGGTTGAGAATCAGGTGGAGCTACCCGTCTTCTAGACGACATCCTAGCACCACCTCCACCCGCATGAGTGGGGCCTGCTGGCGTGGACAGGGTGAAAGGACATTCTCTTGGCCCAGTTGCTTCTGTTGGTTGGCAGGCATGTGTCGGCTCTCCCTCACGTCAGCAGTGCCGGGTGGCCTGCGTACCACCGGGGCTGGGGAAGCATCTGAGCTCATCTTGGCTTCCGCTGTTGATACCTGTGGCTCATCTGTGTTTCTTTGAACGAGTTTTCCTGATCACTCGTAACCATGTGGAATGAGCTGAGTCAATGGAAGCCAGTCCACGCACACAGCAGGAGGGTCCTCTGGGCTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACCACAGGCGCCCGCCACTGCGCCCGGCTAATTTTTTGTATTTTTTTTTTTTTAGTAGAGACGGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTCCTCTGGGCTTTGCTGGAGGCACTGCCTGGCTGTGGGCCACTGGCTCTGTGTAAGGGTGTCTGTTCCTTCCACAG
Seq C2 exon
GGGCAAGGAAGTCTGCAGACCCCAAGAGACCTTGTGATCATCCAGCTTGGGCTCACAAGAAAACCCACGTGCGGCGAGAAAGAGCCAGGGAAGGAAGCAGCTTTAGGAAGGGCTTCAGGCTGGACACGGATGACGGGCAGCTTCCCAGAGCTGCTCCAGAAAGGACAGACGCCAAGCCCACGGCTTTCCCGTGTCAGGTGCTCACGCAGCGTTGTGGGCGGCGGCCGGGCCGCAGAGAGCGCCGGAAGCAGCGCGCAGTAGAGCTGTCATTCATCTGCGGCACGTGCGGGAAGGCGCTCAGCTGCCACAGCCGGCTGCTCGCTCACCAGACGGTGCACACGGGAACCAAGGCCTTCGAGTGCCCCGAGTGCGGCCAGACCTTCCGGTGGGCTTCAAACCTGCAGCGCCACCAGAAGAACCACACGCGCGAGAAGCCCTTCTGCTGCGAGGCCTGCGGGCAGGCGTTCAGCCTGAAGGACCGCCTGGCTCAGCACCGCAAGGTCCACACCGAGCACAGGCCCTACTCGTGTGGCGACTGTGGGAAAGCCTTCAAGCAGAAGTCCAACCTTCTCAGACACCAGCTGGTGCACACCGGGGAGCGGCCGTTCTACTGCGCGGACTGCGGCAAAGCCTTCCGGACCAAGGAGAACCTCAGCCACCACCAGAGGGTCCACAGCGGGGAGAAGCCCTACACCTGTGCCGAGTGCGGCAAGTCCTTCCGGTGGCCCAAGGGCTTCAGCATCCACCGGAGGCTGCACCTGACGAAGAGGTTCTACGAGTGCGGCCACTGTGGGAAAGGCTTCCGTCACCTGGGGTTCTTCACGCGGCATCAGAGGACTCACAGGCACGGGGAGGTGTAGGGGCGCCCGAAGAGTGGGGTGCTGCGCCTCTGCGGGAGTACTGGGTCCTGAGGGAGAGCTGCAGTGAGAAGTTGCTCTTCAGCCTGGAAAATCAACCTGAATTCAGAGAAGCCTTCTTAGTCCTCAGAGCTCCCCAGTCCCCCGAGAAGTTTACTGGGAAAACTGCCAGGTGGGAGAAGCAGAGCCATGGGTACGCCGGAGATGGCGGGGGCTCTGGAGATGGCGGGGGCTGCGCCCCGGCGCCGGGCATCCTGGGGATGTGCTGAGAGTGTGCGCGACCCCGGAGCCACGTGCCAGGCCGGGCTCAGAGGCGGAGAAGCCTGCCTGGTGCCCACAGCCGTCTGGCTCAGGGACTCCACCCTGGCCCCGAGTCGCCGTCTGCTGGGCCTTTCCTTCCTGGCTCTGCACCCCATGCTGGCTGCCCGGTCTGGCTTCCCTTCTTGTCTCTGTCTTGGGCGAGGCAGCTGTGAGCATTGCACAGAGGCAAAGACCCTCCTGCAGCCTCTGCGCTGGGCCGTAGAAACAAGAGCCTTTGTAATACTGAACCTCATTCAAGGATTAGGAGTGGTGGTTAGGTCAGGGCCACCCCCAGTGCTGCAGGAACGGCCTCCACCCAGCTCTGTTGGTCAGAGCCTGGGTCATGCACCTGGAGTTGGGAGATCAAGTTGGGTCTCAGGGCAGTGAGGTGGCCATATCCACCACATCGCATTTCGTGGGGGAAGAGGTGACCTCTTTGTTTTAAACTTAAGGTGTCTGCTTATCCAGCCAGAAATAAAAATCTGCCAGTGGTGTTCCCAAGGGAAGACCCCCGTGGGAATGGGTCGGGACACTGCCGTGTTTCAGGTTAGCCAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135-ZNF707:NM_001100598:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.252
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF051298=Elf1=WD(100=23.3),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=8.7),PF0009621=zf-C2H2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCCGTGGGTTGAAGA
R:
CCGCAGATGAATGACAGCTCT
Band lengths:
347-2304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)