DreINT0178806 @ danRer10
Intron Retention
Gene
ENSDARG00000059026 | zgc:123217
Description
zgc:123217 [Source:ZFIN;Acc:ZDB-GENE-051113-188]
Coordinates
chr12:3999979-4001674:+
Coord C1 exon
chr12:3999979-4000002
Coord A exon
chr12:4000003-4001511
Coord C2 exon
chr12:4001512-4001674
Length
1509 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CTATAATTTGTTGACTGCAGAAT
3' ss Score
6.1
Exon sequences
Seq C1 exon
ACTCAAACGCACAGACAACATATG
Seq A exon
GTAAGAGAAGCAAAAACATAAATGAAAGTTATGATGAGGCAGGATGCTTATAATTTGTATTAGGGATGCACGCCTTAGGACAAAAGTCTAAATGTGTTTTTATTATTAATAATTATGATCATTTAAAAAGTAAAAGGTAGATTTGCAGTGTTTGTTTGTACACTACCTGACAAAAGTCTTGTGCCTATCCAAGTTTTAGGAAAGACAGATAATAACTTGACTTCTAATTGATCATTTGATATCAGAAGTGGCTTATATGAAAGGCAAAGGCCTCTAGATCACACTTATTTTACCAAAATATAATATAATCATGGCTTGATTTTTAATTATTTAATTATGACAGTAAGGCCTGACTTTGCTTAGACTAATGTTTCATTACTGAACAGAAATAATGTCCAGTATAGAATATAAAGTCCTGCTGCAGTGGAGACAGAATGAATATTGTGTCTGACTCCATCATGAGCTTGGAGGACTGCATCCATACATCTCTGCACTGACTCAAATCACTGATTAATAAAATCATCTGGAATGCCAAAGAAAACATTCATGCAGGACTCCCAGAGTTCATCAAGATTCTTTGGCTTCATCTTCAGTGCCTCCTCCTCCATCTTACCCCAGCCATGCTCAATAATGTTTATGTCTGGTGACTGGGCTGGCCAATCCTGGAGCACCTCGACCTTCTTTGCCTTCAGGAACTTTGATGTGGAGGCTGAAGTATGAGAAGGAGCACAATCCTGCTGGAGAATTTGCCCTCTCCTGTAGTGATGTTTGTGATGTAATGGGCAGCACAAATGTCTTGATACCTCAGGCTGTTGATGTTGCCATCCACTCTGCAGATCTCTCGCACGCCCCCATACTGAATGTAACCCCAAACCATGATTTTTCTTTCACCAAACCTGACTGATTTCTGTGGAAATCTTGGGTCCATGCTGGTTCCAGTAGGTCTTCTGCAGTATTCGTGATGATTGGGATGCAGATCAGCAGATGATTCATCAAGAAAATTTACCTTCTGCCACTATTACAAATGATCAAATAAAAGTCAAGTTATTGTGTTGCTCTTACAACTGGGATCAACAACAAAACTTTTGTCAGGCAGTGTAGTCTGCTATATTATTAAAATGATTGCTAAATGAATACATTTGCTATTAAAAAAATAATAAAAAAGGTAACACTTTATTTTGATGGTCCATTTGAGTATTAGTAGACTGTCTGCTTAATATCTGCTGATACAGACATTCAACAGACATTTAACTGACTATAAGAAACATGTCAAGAAGTACATGTCAGCTTACCCTAACCCAAACCCCAACCCTAACTGATAATCTAATGAGAAATAGTTGCAATGTAACTCATATTCAACAAACGGACCATCAAAATAAAGTGTGTCCAATTAGATTGTTGATATGCACTTCTCATATACAGTATATGATCATAATAATGTGATTTGATAACTGCTCTAAACCGCATTCATGAAATCCTAATTTGTAATCTATAATTTGTTGACTGCAG
Seq C2 exon
AATGTGGGGTGGCTCCTCTAAATACACGTATTGTGGGTGGCACCGATGCCCCTGCAGGTAGCTGGCCCTGGCAGGTCAGCATACATTACAACAACAGGCACATCTGTGGAGGAACACTGATCCACAGCCAGTGGGTGATGACGGCCGCTCACTGCATCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059026:ENSDART00000106650:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.8=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]