RnoINT0153301 @ rn6
Intron Retention
Gene
ENSRNOG00000055991 | Tmprss11d
Description
transmembrane serine protease 11D [Source:RGD Symbol;Acc:620654]
Coordinates
chr14:23377422-23378825:+
Coord C1 exon
chr14:23377422-23377460
Coord A exon
chr14:23377461-23378647
Coord C2 exon
chr14:23378648-23378825
Length
1187 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GCTGCTGCTGCTGCTGTTAGAAT
3' ss Score
3.06
Exon sequences
Seq C1 exon
CACTCACTGACCAGGATACAGAAAATGTTTTGACTCAAG
Seq A exon
GTAAGTTTTTAAATTATTTTAAATTACCTATTAAATTATAAGGATTTTGAGCTCCCTGACAAGGCCATATTAGTCAAGTTGGTGCCTTCATTCTGAGTTCACTCCAGAGGGCTCTTCTTGAAAGCAGGCACTGCACTCCACTCTGGTCGGTGGAACAATGTTTAAGCAATTCTTTCTCCTAGGAAAGAAGAATGGAAGGGAAGTTGAGGGCAATCCACTTGGCACTCGGCATCAAACTCCTGCCAATTTTCTTGGCTGTTCTGAAAAGCTTTGTTCCTGTTGTTCTAAAGCAATGTTTCCTTAGACCTGTAAATTACATTTGATGGCAAAACTCATGTAGCTTTTGCAAACCACCAAAATGGCTTGCTTTGTTGTGGATTTGGGCTAATTATAAGGTAATAAATTATAGATGTCTTGTCAGTTGAAGGCCTATAACCTCAAGGGAAAGTCATCGTGTGCCAGTGTCAGCCCAGATATATTCTCGGGCTAGGAGGACAGGCATAGAATTTCTAGAAACAATGAACTTTACTTCTCAGATCAGCCAAATGTACTTAGAAGTTAGTTCCAGGTTCTTGGATTTCTGATTTAACTTAGATACGTAAAAGGTTTTTGAGTGAGACTCCACTCCGCTATATTTTCAATTCAGTTCTGTGTTTAATCTATGATTATTTTGAACAAAATTGTAATAAGATAATTGCTAGGGAATTTATTTGGAGAAAGCAGGAAAAGGAGACCATAGCCGTGTATGTTCTTAATGGAAGTCTACTTAAATCTCCTTTATTGGGAAATTTGTAAGAACGCACTTGTCTAGGGTTAGCAACCTATTGCCAATAGCAATAGAAATTATGATTCATGATATACCTCTAGCATTACTAATAAATATTAAACTAGACATGAGAAAAACTGTCATGTAAGATTTTGGGTTGAGAAGAACTGAACAAACAAAGCCACCCCAACCCATTTCACCTTCTGGCATTAAAATGTTTGTAGGTTTCTTAAGATATTTAAATATAGTTTTATGATAGAGAATCTCCACAGTAATTTTCTACATGGGAACAACCACCAGCTTGCCGGCATGTTTGTGCTGTTGATGTTGTTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAAGATGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGTTAG
Seq C2 exon
AATGTGGAGCACGTCCAGACCTTATAACACTGTCAGAAGAGAGAATCATTGGAGGCACTCAAGCTGAGACAGGTGACTGGCCCTGGCAAGTCAGTCTACAGCTCAACAATGTCCACCACTGTGGAGGTACCCTGATCAGTAACTTGTGGGTCCTGACAGCCGCTCACTGCTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055991:ENSRNOT00000088552:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.5=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACTGACCAGGATACAGA
R:
CAGTGAGCGGCTGTCAGGA
Band lengths:
208-1395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]