DreINT0179331 @ danRer10
Intron Retention
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35447510-35448222:+
Coord C1 exon
chr15:35447510-35447626
Coord A exon
chr15:35447627-35448099
Coord C2 exon
chr15:35448100-35448222
Length
473 bp
Sequences
Splice sites
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
3' ss Seq
ATAGATGTGTGTTTCTTCAGACA
3' ss Score
5.64
Exon sequences
Seq C1 exon
ACATGGATGAGTGTGAAAACGGAGAGGCCTGCTGTAGTCATTTCTGTAAAAACTACCCAGGAGGCTACGAGTGCGGCTGTAGACCAGGATACACGCCCAACGGATGCACATGTGACG
Seq A exon
GTGTGTGTGTATGTGTGTGCTTTACTTGCTGATCTGCCTTATTTATCTAAAGTGAATTGGATCACATACAGTTGAAATCAGAATTATTAGCTCTCCTGTATTATTACCCCCTGTATATTTTTTTAATGTTCAGAAAGACAATTTTTTTCCAACACATTTCTAAACATAATAGTTTTAATAACTCATTTCTAATAACTGATTTCTTTAATTTTTGCCATGATGACAGTAAATTATATTTGACTAGATATTTTTTCAAGACACTTATACAGCTTAAAGTGACATTTAAAGACTTAACTAGCATAATTGGGCAGGTTAGAGTATTTAGGCAAGTTATTGTATAATGATGATTTGTTCGTAGAAAATAAAAAAATGCTTAAGGGAGCTAATAATTTTAACCTTAAAATGTTTTTTTAAAAATGTAAAACTATATATACACCGTGCATATAGTCTGACATAGATGTGTGTTTCTTCAG
Seq C2 exon
ACATTGACGAGTGTGTGTCTGAGACGTCAGGCTGCTCTCAGTACTGTGTCAACTCTTTGGGCTCTTATGAGTGTTTCTGTCAGGTGGGCTTCAGGCTGGACTATGACCAGAAATCCTGCTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216:ENSDART00000066737:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTGTGAAAACGGAGAGGC
R:
GCAGGATTTCTGGTCATAGTCCA
Band lengths:
230-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]