GgaINT0134960 @ galGal4
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1015994-1016733:+
Coord C1 exon
chr21:1015994-1016116
Coord A exon
chr21:1016117-1016610
Coord C2 exon
chr21:1016611-1016733
Length
494 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTGTCCCCTTTGTGTTCTAGATG
3' ss Score
11.75
Exon sequences
Seq C1 exon
ACATCAACGAATGTGAGGATGGCTCTCACTGCTGCCAGCAGGACTGCTACAACTACCCTGGGGGCTACGAGTGTGCCTGCCATGCTGGGTACCGGCTGCGTGCTGATGGCTGTGCCTGCGATG
Seq A exon
GTGAGCGGGGTGCATGCAGTGCGGTGTGTGTTCTGTCCTTGCTCCTGTAGGTTTGCACCCATCCATTGGGCCAGCATGGCTGTGGGGCTTTGAATTCAATGGCTTCAAGTCGAGCTGTCTCAGAATTGCTCCAGGTCTGAATGCAGCTGCAATTTGCACACAATGTTTGTTCACTGTTTGTTTGTTGCACTTAATTTCCATCTTGGTGGAGCTGGTGGTAAATACAAGCATCTGTATAAAGCACTGCTAACGTGGGGACAAATGCAAGCTATTAATGAAGAGAAGAAGTTGTTCTGCCTGGTTGTAAGTAGCCAGGCACCTCTTCCAGTCACTCCCAGTTACAGAGCCATGCAATCACTGGAGTTTGAAGGGACTCTTATGCAGTGAGCGGAGGCTCTCCATCACTTGAGCAGTCTCCTTCAGCTTTTAGAGCCGGTTGCTTTGTGTATCCAGTGAGGTGCTGCCACCTGCTTGCTGTCCCCTTTGTGTTCTAG
Seq C2 exon
ATGTGGATGAGTGCTCCTCCAACAACGGTGGCTGTGAGCACACGTGCCAGAACCAAGTGGGGTCCTTCCAGTGCGGCTGTCCCATTGGGTACAAGCTGGATGGAGACAGGAGGGGCTGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAACGAATGTGAGGATGGC
R:
AGATGCAGCCCCTCCTGTC
Band lengths:
246-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]