DreINT0179815 @ danRer10
Intron Retention
Gene
ENSDARG00000044847 | zgc:171599
Description
zgc:171599 [Source:ZFIN;Acc:ZDB-GENE-080219-33]
Coordinates
chr17:49535693-49537118:-
Coord C1 exon
chr17:49536845-49537118
Coord A exon
chr17:49535992-49536844
Coord C2 exon
chr17:49535693-49535991
Length
853 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAAT
5' ss Score
1.91
3' ss Seq
AATCTCTTTAATCTTGGCAGATC
3' ss Score
7.57
Exon sequences
Seq C1 exon
GTTTAACGTGTAGTTTTCCCTCATAGAAGACTTTCGACATCGCGCGTCAAGCTTGAGTCAAGTTACTTTTGGTTTGTTATCGACTGAGATCGGTCATTACAGCCAGATGGGAGACTAACGAGACTGAAAGTCGTAGCACGAACATTAAATCATTCCATATAAAAAAAAAATCTGGTTTCAAGACGATTGTTGCTTCTTCTGACAGAGTTGGACAAGTTCCAGTGTCATCTGCCCTGGTCGTCGGCTCTTCGCGCATCACTGGGACCAAACAACA
Seq A exon
GTAAATATCAGTTTATATCTGCTCGAGTAAAGAGGCCTTTAGTTTGTGCCACAACTCTATCAGCACCCACAATAGAGGTAAAGTTGGTTTTATATTCGCACATTCGTTCATTTAGCAGTCCCTATATTGTTTACCATGTTATTATGAATATTCGATCAGAATTAGCATGCAAGTATGACTTGAAAACAACATTAACACTGTCTAATTCACTGTGAACAATGTTGTACTTTGATAGTCATTGGCGGCTGATTTCCCTATTTACAATTTGCAAAGAATACTTTAATAAAATTATATTATTAAGAAGAATGTCTGAATATCCGATTATAAAGCCAACTTTCATTCAGTAATTTCACTTTGATGGCAAAGAAAAGGTTATTTTCAACACTTTTAACATGAAATAACTGAACATAAACACAAGAATCTGAAAAAAAAATGCTCACTGTAGAAGAAAATTTCAGATGGCACTTTGAGGTTTTTTTCTTCTGAACTCGTTATATGCGTTTCTAAAGTAAATGTATAACTACCATACCAAGTGTTATGTTTTTTTCTTTTATAAAATAATTTTTAAGTTGTTACCCACAGTCGATGGGTTGTCTGTTTTTTTAACAATTTGTAAATTTCTTGGTTTATACTTATCTATTCCTGTATTGATGTTTGATATGTTCAACTTGTCATTTTTTTGCAATTAAAACCAGTTAAATTTTTGATAGTATAATAACAAAAAAAAAAGATTTTGTAGTTGGTTGCATTAAAAATTGAAAGATTGATTGAAGCAAACATAAAATGTTAAGTAAAAGAAGAAAATATTAACTAAAGAGAAAAATATTAACTGAAATCTCTTTAATCTTGGCAG
Seq C2 exon
ATCTCTTCCATCTATTAAGCTCCTCCTCCTGTAGTGAAGCTCCTCCTTCCTTTTAGTTCAGCTATAAATTCTGGAATATTCCCATCTGATTGAAGTGAAATTGCAGAGTTTATTGAAGGACAGAAAGAGCATGAGTGATCCAGAACTGTGCAGAGTTAAACAGGAAGAGACCGATGACAGAGAGAACATGAGTGACTCAGAACCCTGCAGAATTGATCGGGAAGGCACCAAGGACAGAGAGAACATGAATGATCCAGAACCCTGCAGAATTAATGAGGAAGAGACCGAAGAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044847:ENSDART00000157331:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.989
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGATGGGAGACTAACGA
R:
TCTGTCATCGGTCTCTTCCTGT
Band lengths:
355-1208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]