DreINT0180388 @ danRer10
Intron Retention
Gene
ENSDARG00000098099 | zgc:64065
Description
zgc:64065 [Source:ZFIN;Acc:ZDB-GENE-040426-1355]
Coordinates
chr6:8920721-8922120:+
Coord C1 exon
chr6:8920721-8920843
Coord A exon
chr6:8920844-8921958
Coord C2 exon
chr6:8921959-8922120
Length
1115 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGTT
5' ss Score
2.39
3' ss Seq
TTGACTTCAAATCTCCACAGGAG
3' ss Score
8.35
Exon sequences
Seq C1 exon
GATAAAACCATCTCTGAGCAGCTTGATGCTGGTATGCGCTATTTTGATCTGCGGGTTGCTGGAAAGCCTGGGTCCAGCGATTTCTTCTTCTATCATGGATTGTACACAACGATAACTGTGAAG
Seq A exon
GTTGTTGACCTGATTCTGTTTTTTGTTATTTACATAAATTAAATTCAAAAGGCTGTATTAATCAGAAATTAAATTGATAGTTCTCCCAAAAGTGTCAATTCTACTCACCTCTTGTTTTTTTCTTGAACACAAGAAGATATTATGAAAACCTTCATACTAATTGTTTTCCTATTATGGAAGGCATAATTATGCAACACAGTCTCATTGGAAAAATGAGCTTCAGTCTACATTTCAGTGAAACCGCAAAAACCCACTTCAACATACGTTTGACTGCAGTTCAAATGAACCCTGTGGGGCTGTATGACACCAACAACTTTTGTTCCTTTTCACACAAATTATATTTACAGGGACAAATTATTGATGAATAAAAGATTCATTTTGTAGAGTTCTTTGCAAAATACCACAATATGTTTGCCTCACCCGTATCTCCTTACTGACAAATGTTCTAGCGTGATTAGTTTACTTGGTAGCTCACTTTGTATGGAGTGATCGTTGTGAAGCAGAGGGCTCAAGTTCGAATCTGGTAAAACATGGTTCCACGGAAGAAAAAAAAAGAAATGTAAAAGCAAGGTGGTCGTAGTCCACTATTCTCTTACTGTTGCTTATGAAAACACAAGGGTTGTTAGTAATGGGAAGGGTTTAAGGGTCAGTGGTTCACAAGGGGATCTGTACGACAAGCCCCAGCTTCTCATGGGCTTGTACAAGAAGGGCGTGTATCTGAAATGTACAACAAATCATATTCAATGTGATGTATTTCAGATTTGCAAAACTGTACACAGCGTCCTCTAGTGGATTTGTCATCTGAAACATGCACTGAAATGTACCCGGAGTAACGTATTTGATGTTTTGCAAAAAATGCAGGCTGAGGCAGATATTTCCAATGAGCCTGGGTAATGCAGTAATTTGTAATTGTATATATTGTATAACTGTATCATTATTCAAGAATTAATTACATTTAAAAAAAAAAATTCTTGGAAAATGAACATTAGGCAATAGATATTTGCATATATAGAAATATACAATATTTTTAGTTTTCAATTATTTTTAAGTTTTTTGTAATTTATTTCTGAATTCTGCAATAAAAAGCAATTCTTATTGACTTCAAATCTCCACAG
Seq C2 exon
GAGGCAATGGAAGAAGTCGATACATGGTTAGGAAAGCACTCTAAGGAGGTAGTCATCCTTGCTTTCTCACATTTCAAGAAAATGTCAACTGAACAACACACAAAGCTGATGACGTTCCTCAAAGACCATTTCAAAGCCAAACTCTGTCCTGATTATGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098099:ENSDART00000168727:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(24.5=100)
A:
NA
C2:
PF0038814=PI-PLC-X=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCATCTCTGAGCAGCTTGA
R:
TCCATAATCAGGACAGAGTTTGGC
Band lengths:
278-1393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]