DreINT0181250 @ danRer10
Intron Retention
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52468880-52469163:+
Coord C1 exon
chr7:52468880-52469020
Coord A exon
chr7:52469021-52469100
Coord C2 exon
chr7:52469101-52469163
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
GTGGTCTTTATTACTCTCAGGTT
3' ss Score
7.29
Exon sequences
Seq C1 exon
ACTTCCAAAGGGAGATAATAAGTGTATGGAGTGTCTCCATGATGTTGTGGACCCCTACATACATTATCCGTTATCGCTGAAGTGCAATAAATGCAAGTACAGATCAAGCTGCCAGAAAGCCTTCAGACAGCATATGATCAG
Seq A exon
GTTAGGAGAAAACATGGATGAATGAATATTTACAAATGACAATGATCAGATCTCTACATTGTGGTCTTTATTACTCTCAG
Seq C2 exon
GTTTCACCAGAATTCTACTAAAGTGCGGGTTGGCAAAGTGAAAAATCCTCCACGTGGTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013:ENSDART00000110906:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGATGTTGTGGACCCCT
R:
GCACACCACGTGGAGGATTTT
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]