GgaINT0028084 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7116758-7118677:+
Coord C1 exon
chr10:7116758-7116898
Coord A exon
chr10:7116899-7118614
Coord C2 exon
chr10:7118615-7118677
Length
1716 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTTGTGTGTTTTTTTTTTAGTTT
3' ss Score
10.54
Exon sequences
Seq C1 exon
GTGTCGTTTGGGAGCTCACAAATGCATTGAGTGTTACTCAGAAATAAAAGATTTTGCAAGCCACTTTCCTGCGTATGTCCATTGTAGCTTATGCAGATACAATACTAGCTGTAGCAAAGCCTATGTGAATCACATGATGAG
Seq A exon
GTAAGAATTCCGTACAATTTCTATTGAATTATCTTGTGCTTTTAAAGTTAATATAAATTGTATGAAGTGTGTGTACTGAATTTTGGATTGTGACATAGGTCTGACAGAGCATGTGTATGTTGGATTTTCACTTCTAATGAGGACCTAAACCCAGTATTCTTGTTGTACCTTAAAAAGCTAAGTGTTCAGGCAGCTTTCTGTGTTTGCTTCACAATTTCAGTGGGGTCTTTCACTATCATTTCAGCCAAACTTAACAAATAATGGTTAATCGTTGCATATTCTGAGTTTCAGATTTAAGACCTCATCTGTTTTGCACAAGTGCTGAACATATAAAGCCACTGCTATCACTAATGAAATCCATGCTCAGAATACCATGTAAAGGGTGTCTCAAATAGCCTAACCAAATGGATGCTACTTTGATCATCTGTGAAAATAGCAACATCTGATCTTGTATGAGGTTTGTTGCTGTAAGACAGTTTAAGGCATTAGTGATGACAGATGTAAAAAAGCCTGTGAAGAAAACGACATGCAAGTTTACAGAGCAATGGGAGTATCATATGCAATGAGTGGACATAGACCTCTTGGCAGTGAGGTTAAAAAATATTTTGAAAACCTACTTGTTAATCCTGTGCCTTTAACAACAGGTCAAATGTATTGTGGCCAAAAAAAAAAATCTCAGAATACAATTGTCTTTTAAAATATTTGTTTAAAATGCCTTGATGTTTTTGAAGTCTAGAATACTTAAATGTATGACTCATATTTTTTGTATATCTTTTGTGCGTTGTCCTAGTCACATCAATGTCAATGTTCTTGTATGAAATAATTTACAAACTTCTATGCAGATAAACTTTGCATGCTTAACAAATAATGCATGCTTAACAAATAATAAAAATTAATCTACCTAATTGTAATCATACAAGAAAAAACACTTATTCCAGAACAGGAGAAGGGAATCTAATGTAAGCTATTCTTGCTGTTGTCCAGTTCAACCATGTGGCAGAACAACTGGTCTCGTGTCCTTAATCTCCTCAGTGCTCTATATCTTGACTGTCCCACTACTTTGACCTCTTGCAGCTAACACCACCTAAAGAACAAGAAGTGGTGTGGAAGAAGTTTGTGTGTTTTTTGTTGTAGCAGCATCTCTACTTGGTTGCTTGCTTTTTCTTTCATATTGGGGTTATATTATGTTGGCACGTGCTTAACCTGCATGTGTGATAACTTGAAGTTGTCTAAAGATTTAATTTTCAATGTCTCTTGAGGAAGTTTGTGTTGAGTAAAACTTCTTCACTGTATAGCTTTCACTGTGGAACTTAAGCACGGTGCTTCAAGACCTGAACTGCTGATGGAAGCAAACTATGTTCATGTAGTACTGTGCCAAAAAAATTGAGATCTTGCCTCTCCCAGGCTCCTTAGTAGAGAGCTCAAAAGTAGAAATGTTTGGTGTTCCTGAGGTTGTTTGTTTCTTCTGCTCTTCAGCACAGCAATGTGGAATTTTCTTTTACCAGTGTTCTGAACTGGAGATGACATTCACAAGCATGTACAATTTCATCAAATCAGTTTTTAGAATAGTGCAGGTCAGTAGTTAAACATTGTTTTCTTGCCTTGTTGAAAGCAAATTTTCAGTATCGTGTGTAGTATGTAGGGAATATGTGGAGTAATGTACTCAAGAAAGAAGATTAAATTATGATGGGGTTTTTTTGTGTGTTTTTTTTTTAG
Seq C2 exon
TTTTCACAGTGCTCGTCCAAGTAAAAGATTTTGGATATACAAGAAGCATTCAGAAGATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCGTTTGGGAGCTCACAA
R:
TCTTCTGAATGCTTCTTGTATATCCA
Band lengths:
198-1914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]