DreINT0181251 @ danRer10
Intron Retention
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52469101-52472694:+
Coord C1 exon
chr7:52469101-52469163
Coord A exon
chr7:52469164-52472575
Coord C2 exon
chr7:52472576-52472694
Length
3412 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TTTTTTTCTTTTTATTAAAGGAG
3' ss Score
7.32
Exon sequences
Seq C1 exon
GTTTCACCAGAATTCTACTAAAGTGCGGGTTGGCAAAGTGAAAAATCCTCCACGTGGTGTGCG
Seq A exon
GTAAGATTTGATGATTTATTTCATCATTTTCTGTAATAGAATTGTTTATTTCTACATTTAAAGGTTTAGTTAATGCAAAAATAAAAATCCTTTTGTTAATTACTCACCCTTGTGTGAATTCAGTCCCTTGAGGCCGTCATTCATCTTTGGAACACAAATGAAAAGATTTTAGATGAAATCTGAGAGCTCTCTCATCCTCCATATTCAGCAACAGTTCTAAAAATGAACCAAAAACATTGTCAAAACATTAGTTTCAATTCAGTTGTTCAACAAATTACACAAAGCTCACAAGAACAGATTTGTGCACCAAACAAAACTCTGTAAGTAGATTATGGGTGCGTGTTTATTAAAGATAATACAAAGATTGCGCTGCTGACTCTAATGACATTGTTTTACTCCTGTAGTAAAAGTGCACCCTGACATGGAGAGAAGATTTAGGCCAACAAAGTAGATTTTACAATTTTTTATTGGCACACAAAAGTGTTGAGTATGATAACAGTTAGCACATTTCATACCCATTGGTAATTCAATAGCACATTTCATACCCATTGGTAATTCAAATGGCTTTAACTAAACAGGAATAAAAGAGACAAGTATAAGAAAATGAAAACAATGAATAAAACTGATTAAAATGTGATACAACAGTCTATAAAAGAATGAAAAAGAAAAGAAAGACATAATAGTGTGATCTGTGGGACATGGCACAGTGCTCATACAGTAAAGGCACAGCTAAACGTGTGTTTTCTGTCTTGATTTGAATGTACCTCATGTTTGAGCACATCTGATCATTTCTGGAAGCTGATTCCAGCAGTGGGGGGCACTGTTAGTAGCTGAAGGTGGTTTCATCCTGCTTTGTTTATACTTATTGAATTGCTAGTTTATATGATCCTAAAGATCTGAGTGATCTGTTAGGTATGTATTCAGTGAGAATATTTGTAATGTATTGCGGTCATAGGCCATTTAGTGATTTTTAGACAAGTAATAATACTTAATCTATTCTTAATTTAACTGAGAGCCAGTGCAAAGACCTGAAGACAGGGCTGATGTGCTCTGATTTCCTGGTTCTGGTCAGAATCCTGGCTGCAGCATTCTGGATGAGTTGCAACTGTCTGATTGTGTTTTTGGGAGGGCCAGTTAGGAGTCCATTACAGTAATCCACCGTGATGCTGATAAAAGCATGAACAAGTTTCTCTAAGTCCTCAGTAGAAACAAAGCATCTAATTCTTGCAATGTTTTTGAGATGTTAGTTTGCTGATTTACTAACTGCTTTGACATGACTACTGACATTCATATTCGACTCCAGAATCGCACCAAGACTCTTGACCTTATTTTTTGTTGTTTGACCCCTAGAGCCAAGGTAGAGGGCTCTCAGATTTCATCTAAAATATCTCAAGTTATGTCTGAATATCTCAAAAATCTGAAGATGAATAAATGCCTCATGGGATTGAAACGACATGAGGATGAGTGATTAAAAACTAGGGCTGGGTATTGAGTTTGATACTTTTTAAGCACCGACCGAATCGTCTCGATACTTTCGAGTATCGAAAAAATCATTTTTCGTTCGGTACCAAATTTCGATACCCAAGAGTCTAAAATTGTCAACGTGCCCGGATCAAAAGCTGGTAATGGGCTGCAGCGAGGCTGTCTTGAAAATCAAAAGTTTACGGCGGTTACGCCCACTCGCTCAGAGCTTGTCAAATGTGAGGCTGTAATGCGTACACTACACTTTAAAGCATTTTTGCATTGTTTGACTGCAAAAAGATCGGCGCAGTCATCATAACCACGTGCCCACCACAAGCGTGGTCCTCCGTGACTGATGAGGATTAAAGCGGGATGGCTGGGGCTCTGAAAAGTAAACAGAGCAGACATAAGAGCAAGCTGACGGCCCTTTTCCACCTCCTCCGCCTCAAAATCATTTTAAAGTTGGGCAAACTTCGTGTTGTAACTTTTGCTTTTTGTCGTTAATAATACACGCACTGCGGGCTACACAGAGCAACTTTATTCTCTCCAACATCAGTGCGCACACACATAAGGATTCAGGGCCATACCATTACATAAACTGCGTGGGGGCAAATCAGGACTTACCAATTCATTGCTGAAACAACACTTCGCATATTTCGCAGTGGCTAGTGTGGCACAGATAGCAGAACTCGCCAAACAGATCCGCCACTTTTGACGCTCATAAACAGTCACAAAGTCCTCGTGCTGCAGGAATTATGAGGTTGCTGAAGGTGTGCAGCTGTCTTGAAGTGAGGGGTTTGCATCTTTTATAAACTACGACAGTTTGCGTTCACTGAACAGTTAATAAATCCATATGAAACAGCCCCTTAAAAGTCACGTCTCGCTTTCAGTTTCGGGGTTAGGCGCATTTTGCACAATTCCGATTTGTTGCCTATATCAGATTTTTTTGCTTGTCCGTTTACACATTCATTTAAGCCCTGCACACAAGTGTACCGCGCTCTGGCACACTGATAGTGTGAGTACAACCTAAATGAACGTGTAAACGGACAAGCAAAAAAATCTGATATAGGCAACAAATCGGAATTGGGCATCAAGACCTGACATGACAGTGTAAACGGGGTTTGTGTATCTTATTTAAATGTCCTTATCCTTGGCTGCATTAACAGTTTAGCTTTCATGTTTTCTTCACATTAATGTTATAGTCTCTGCTCCTACTGAAAGATGAATGCCACAGGATTGTTACAATTTTATTGTTAAAGGTTTGCTGCCTTTTTTTACTGTGAAGAAAGATTAGATTGACTGGATATGCATTTTTCAATGCCCATTAAAGGAACCAAAAACAGTCAAAATTAGTCCATGTGATATAAGTGGTTCAATCATAATTATATGAAGCTGCGAGAATACTCCTGTGTGCAAAGTAAGCAAAAAAAACTTTATTCATTGATTTATCTATGGGAGGATCAGAAAGCTCTTGGATTAAATCCAAAATATCTTCATTTTAAGATAATTAATGACAGAATTAAAATTTTTAGGTGAACTAAACCTTCAAGCAGCAGTAAGCCTCACAAATACTTAAAATTGATCGACTTAAAACTGTTTGAACTTTATAAAAACTGTTTGCACTAATATATTGTGTTAACTACACTTTGTTCATTTTGTGCTTTTGTTCCTTTGTTTATTGGTCTTAGAGATAAGCCTGCTGTAAAAAGTGTCCCAAACATCCTGAAAAAATAAAACCAAAGTTTTCCAGAGATTATGTATTATTTAATCTTGTTAAAATATATTTCTTAAAATAAAAGTATCGGAAAAAAGTATCGTTCGGCACCGGTATCGGTATCGAAAATTTTGGAACGATACCCAGCCCTATTAAAAACAGACTTTTTATTTCTGGGTAAACTAATCTTTTTACTTGCAGCAATTGAAAATATCTATTTTTTTCTTTTTATTAAAG
Seq C2 exon
GAGTCTAACACTTGTGTGTCTCAAGTGTGACTTTCTGGCAGACGCTTCTGGTGCAGATAAGATGACTGAACATTTGCTCAGCAGGTCGAACCACTCCTGCCAGGTCATCATGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013:ENSDART00000110906:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]