GgaINT0028085 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7118615-7119287:+
Coord C1 exon
chr10:7118615-7118677
Coord A exon
chr10:7118678-7119168
Coord C2 exon
chr10:7119169-7119287
Length
491 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TTTTACTTTCTCTCCTCTAGAGG
3' ss Score
11.18
Exon sequences
Seq C1 exon
TTTTCACAGTGCTCGTCCAAGTAAAAGATTTTGGATATACAAGAAGCATTCAGAAGATCTAAG
Seq A exon
GTAATTCTGCTTTTATTCAGTTGTAGATCATTGTTTTTGCTTTATGGTAGTGTTTTGATTGCTTAAAATAAAAGCCTCTTGAATTTCTAGGGTTCCACAAAGAACAGAGAGACAAAAGTGTTATGACTTCTACTGGCAGTGTTCTCTTTTCTGACAGACTTTGTTTTGGTCCACTTTTGCTGACTTCTTTCTCAGAGCTTTTTTAATACATGTTTCCGTAGCTTCATTTTCCAATTATCCATAGTGTGCAAGGTCTGAAAGGGGAGGGAGGTGGAGAAAACCAAGGAACTCATTCTTTGTACTGTATTCAGCATGGAGATGTTTTAGTCAGTGACTGGAATTTCCATGTGTAATGCTTCTGTGAGTCACCTCATATAAAACTGGAAAAGCAGGGTTGTTTTTTTTTCTTTAGCCTGTCCAGTAGCTGTAGGTTCAAGCTGTTTTCACAGCCATGTTATGTTTACACATGCTTTTTACTTTCTCTCCTCTAG
Seq C2 exon
AGGTGTGACTGTAGTATGTCTTAACTGTGATTTTCTGACTGATGGTTCTGGCTTAGATAGGATGGCCACACATCTGAGTGAAAGCCATACTCATGCTTGTCAAGTTATTATAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]