GgaALTA0000335-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10422873-10424033:+
Coord C1 exon
chr17:10422873-10422976
Coord A exon
chr17:10423929-10423975
Coord C2 exon
chr17:10423976-10424033
Length
47 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TTTTTTTTTCTTTCAGGTAGAAA
3' ss Score
3.3
Exon sequences
Seq C1 exon
ATGATACAACAGGAACCTTTTCCATCTATACAGTTTACCAAGGGCATGAAATTATGTTCCATGTTTCGACAATGCTACCATATTCTAGAGAGAACAAACAGCAG
Seq A exon
AAAGGAAGCGGCATATTGGAAATGACATTGTCACTATCGTATTTCAG
Seq C2 exon
GAAGGAGAAGAGACTGCTCCAGCATTCAAGCCATCCATGATTCGCTCTCATTTTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-21-26,21-25,21-24-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=FE(18.1=100)
A:
NA
C2:
PF0214510=Rap_GAP=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTATACAGTTTACCAAGGGCA
R:
TGAGAGCGAATCATGGATGGC
Band lengths:
133-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]