GgaALTD0000232-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10422906-10424033:+
Coord C1 exon
chr17:10422906-10422972
Coord A exon
NA
Coord C2 exon
chr17:10423925-10424033
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGCAGGT
5' ss Score
-2.08
3' ss Seq
CCTTTTTTTTTTTCTTTCAGGTA
3' ss Score
13.93
Exon sequences
Seq C1 exon
TTTACCAAGGGCATGAAATTATGTTCCATGTTTCGACAATGCTACCATATTCTAGAGAGAACAAACA
Seq A exon
NA
Seq C2 exon
GTAGAAAGGAAGCGGCATATTGGAAATGACATTGTCACTATCGTATTTCAGGAAGGAGAAGAGACTGCTCCAGCATTCAAGCCATCCATGATTCGCTCTCATTTTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-20-24,21-24-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=FE(18.1=100)
A:
NA
C2:
PF0214510=Rap_GAP=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGGCATGAAATTATGTTCCA
R:
TCATTTCCAATATGCCGCTTCCT
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]