GgaALTA0000854-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001910 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr17:7902502-7903032:+
Coord C1 exon
chr17:7902502-7902583
Coord A exon
chr17:7902789-7902830
Coord C2 exon
chr17:7902831-7903032
Length
42 bp
Sequences
Splice sites
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
3' ss Seq
ACGTGTTTGTTCATGCGCAGCAG
3' ss Score
6.15
Exon sequences
Seq C1 exon
GTGTGGGAAGCAAGTGCTGCGGGTTACCCTGGAGGATGTGAGAAGAGTGTTGAGAGAAAACACGTGCTTTCAGAGGAAACGT
Seq A exon
CAGTCAAAGCTAATAATGTCTTCTGCTGCCACTTTAACAAAG
Seq C2 exon
ACGTCTGGAGTTGGTGCATCTGCTGCTGAGAAGCACAGGGGGCTGTGGAGCACCATGGGGAAAAGTCGTCGTCAAGAGAGAGCACGTTGGAGAAAAATGAACCTTGACAGAAAACTCCTCATGGCAGTGACACCTTGGGTGGGCGACGTGCTATTGCCTTGCACTTTGCGAGCTGGGAAGATGGCTTTTGATCAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910-26-28,26-27,26-26-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTACCCTGGAGGATGTGA
R:
TGCTCTCTCTTGACGACGACT
Band lengths:
146-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]