GgaEX1054437 @ galGal4
Exon Skipping
Gene
ENSGALG00000001910 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr17:7901022-7906809:+
Coord C1 exon
chr17:7901022-7901107
Coord A exon
chr17:7902789-7903032
Coord C2 exon
chr17:7906677-7906809
Length
244 bp
Sequences
Splice sites
3' ss Seq
ACGTGTTTGTTCATGCGCAGCAG
3' ss Score
6.15
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTCACTGGAGTAAAATAGCTTCTGAGTTGCCACATCGGACTCGCTCCCAGTGCCTGAGCAAGTGGAAAATCATGATTGGGTCGAAG
Seq A exon
CAGTCAAAGCTAATAATGTCTTCTGCTGCCACTTTAACAAAGACGTCTGGAGTTGGTGCATCTGCTGCTGAGAAGCACAGGGGGCTGTGGAGCACCATGGGGAAAAGTCGTCGTCAAGAGAGAGCACGTTGGAGAAAAATGAACCTTGACAGAAAACTCCTCATGGCAGTGACACCTTGGGTGGGCGACGTGCTATTGCCTTGCACTTTGCGAGCTGGGAAGATGGCTTTTGATCAAACAAAAG
Seq C2 exon
GGCATGGAAACTGAAGACAGTGCTGCACAATCCATCGTGGGCACCTGCACTGATGGGACTGCCAGTGTTCCCCAAATCAGGAGAAGTGTGCGCATCAGGAAGAGGTTCACAAAGAGGAGGAGGGTGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910_MULTIEX2-3/7=C1-C2
Average complexity
C3*
Mappability confidence:
86%=100=86%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.060 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTAAAATAGCTTCTGAGTTGCC
R:
CCTCACACCCTCCTCCTCTTT
Band lengths:
212-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]